Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2938 86.0 1e-11 >seq2938 Length=227349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||||| || || | || | || | |||||| ||| || || || Sbjct 129110 ATACCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCG 129169 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| || | || |||||||| || || | | ||| || ||||| Sbjct 129170 GAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGA 129229 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || || || || || || || || || || Sbjct 129230 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCG 129289 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||||||| || || || | ||||||| || |||||||| Sbjct 129290 ACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTTTTAACAAAAATCTGCAT 129339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905102758880400