Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2497 499 3e-136 seq11 174 2e-38 seq2938 129 6e-25 seq2728 113 4e-20 seq2166 96.9 3e-15 >seq2497 Length=103896 Score = 499 bits (552), Expect = 3e-136 Identities = 1260/1873 (67%), Gaps = 72/1873 (4%) Strand=Plus/Plus Query 147943 CGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGT 148002 ||| ||| || |||||||||||| | ||||||||||| ||| | ||| |||| || Sbjct 42739 CGGCTTG-GTTCGCAGATAGTACGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGT 42797 Query 148003 GCACCGACGACATGAGCGTGT----ACGTCGGGTGCGGCACAAACAGA---TTAAACGAC 148055 ||| ||| | ||||| ||| ||||||| ||| | | | || || | |||| Sbjct 42798 GCATCGAGG---TGAGC-TGTCCAAACGTCGG-TGCCGAA--AGGTGAATGTTGAGCGAC 42850 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCT-T 148114 || |||| || ||||| || ||||| || ||||| || |||| |||| || | | Sbjct 42851 TGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGTCGATGA-TCGCCTTCTGGCT 42909 Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTG 148174 ||||||||| |||||||||||||| |||||| | || |||||||| | | ||| Sbjct 42910 GATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCAGGAATGCCTGGCACGTTCTG 42969 Query 148175 CACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTC 148234 | ||| |||| |||||| | || | || ||| ||| | | ||| |||| Sbjct 42970 GATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTC 43029 Query 148235 GATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCG 148294 | ||| || | || || | ||||||||||| ||||| || |||||||| ||||| Sbjct 43030 CACCAGCTCGCGCAACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG 43089 Query 148295 CAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353 ||| || | |||| |||| | || || || ||||||| ||||| ||||| | Sbjct 43090 -AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCG 43148 Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTT 148413 ||| || || ||||| || | ||||||||||||||| | ||| | || || | Sbjct 43149 TCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCT 43208 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 || ||| || ||||||||||||| || |||||| || || |||||||||||||| Sbjct 43209 TGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACT 43268 Query 148474 GCAGAATGCCGCGGCTA-GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCC 148532 ||| | | | | || | ||||| ||| |||||| ||| |||||| | | Sbjct 43269 GCA-ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCA 43327 Query 148533 GCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 ||||| ||||| | |||| || || ||| ||| ||| || ||||| || ||| ||| Sbjct 43328 GCCAGCTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTT 43386 Query 148592 GAGCAGC---GCC---GCCGACTCGCTTTCGTACGGCATACGC-AGCCGCACAAACGCGT 148644 || || ||| |||||||| ||| ||||| | | || ||||| | Sbjct 43387 CAGTCGCCGAGCCTCGGCCGACTCAA------ACG-CATACCCCATGATCATGAACGCAT 43439 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 | ||||||||||| || || | || || || ||||| |||||||| |||||| Sbjct 43440 CCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCT 43499 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGC-GCACCACCACCTTT 148763 ||||| |||||||| ||| |||||||||||||| || || ||| | |||| Sbjct 43500 CCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTG 43558 Query 148764 GTAATTCTGCGCAGCAATTCAAAATCGTACTT----GTCATCTACG---ATGCATCGGTT 148816 | || ||| |||| | ||| |||||| | |||| || | ||| | | Sbjct 43559 GCAACGCTGTGCAGACGCTTAAAGTCGTACGTCTTGGTCA-CTGGGTCAATGAACGTGGG 43617 Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 || ||||| ||||| || |||||||| ||| ||| || || ||||||||||| | ||| Sbjct 43618 CAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGAT 43677 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 ||||| |||| ||| ||| |||||| ||| | |||||| || |||||||||| ||| Sbjct 43678 CTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 43737 Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAA 148996 | |||||||||||||| ||| | || ||| || || ||| | || | ||| Sbjct 43738 GGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG- 43796 Query 148997 CCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAA 149053 || ||| | |||||| || ||| ||| |||||||||| |||||| Sbjct 43797 -CGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCG-AGCGACCCTCGGCCTCGTAGCG 43854 Query 149054 AGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGG 149113 || || ||||| ||| | || |||||||| ||| | ||||| ||||||| || || Sbjct 43855 CTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGG 43914 Query 149114 GCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCA 149173 ||||||||||||||| |||||| | | || | |||||| || ||||| |||||||| Sbjct 43915 GCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCA 43974 Query 149174 GAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGT 149232 ||| || || | ||| || |||| | ||| || || || ||| |||||||| Sbjct 43975 GAGTGCATAGAAGAGCTCACGCG-CACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGT 44033 Query 149233 TGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGC 149292 ||| | || | ||||| |||||| || |||||||| | || | || || | Sbjct 44034 CGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGAC 44093 Query 149293 GC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTT 149349 || ||||| ||||||||||||| |||| | ||||||| || || || | ||| || Sbjct 44094 GCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCA 44153 Query 149350 CAATGCC---ACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCAC 149404 ||||||| ||| || ||||| || | |||| ||| |||| | || | Sbjct 44154 CAATGCCGTTGCTGACA---CCGTTGGTGCCGGCAATGTACGA--GCCGGTGCCACGGAT 44208 Query 149405 TTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTCGCCG 149462 || | ||||| ||||||||| || ||||| ||| ||||| || | |||| | Sbjct 44209 GCAATGGATGTTGAGGCCGATGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTG 44266 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 || || ||||||||| ||||| ||| ||||||||| | || |||||||| | Sbjct 44267 AGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAG 44326 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | ||||| | || ||||| ||| | || || |||||| ||||| || || Sbjct 44327 AGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTT 44386 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 || ||| | | ||||| ||||| ||| || ||||| | ||| |||||||| | Sbjct 44387 TGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACA 44446 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAG 149702 ||||| ||||| ||||| ||||| || ||||| || || ||| || |||||| Sbjct 44447 GCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAA 44506 Query 149703 TAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCA 149762 ||| || || |||||| |||| || | ||||||| ||||| || ||| | Sbjct 44507 TAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATG 44566 Query 149763 ATGGCGGCGTCGA 149775 ||||| | ||||| Sbjct 44567 ATGGCCGAGTCGA 44579 >seq11 Length=69059 Score = 174 bits (192), Expect = 2e-38 Identities = 528/804 (66%), Gaps = 39/804 (5%) Strand=Plus/Plus Query 120369 TTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGG--- 120425 ||||||||| ||||| || ||||| |||| |||||||||| ||||||| || ||||| Sbjct 34006 TTTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACA 34065 Query 120426 -GTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAA 120484 || | | ||| ||| || | || | | ||| |||| || || || ||| Sbjct 34066 TGTGGAGC-CGT---AGTGCACTGGGTTTCCGAGCGATACCAGCAAGCGATCGGCGACAT 34121 Query 120485 ACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGC-- 120542 |||||||||| | ||||||| || |||||| || | | ||| || || | | Sbjct 34122 ACTCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACGGGGATTGATT 34181 Query 120543 CG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGT 120601 || || ||| | |||||||||| ||||| ||||| ||| || ||||| |||| Sbjct 34182 CGCACAGGAA---CGCCTTCTCAATTTCCACAGCCTCAGTGATGATCTTGAGCACCGTGT 34238 Query 120602 G-----GC-CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCG 120655 || || || || || | | | || || ||||| |||||||||| Sbjct 34239 CTGGGTGCGCGCGCCTCCTGAGGTGGCTGA---------AGAGAAGGCAGGCAAAGTCCG 34289 Query 120656 TGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGC 120715 |||| || |||||||| ||||| || ||||||||| ||||| || |||||||||| | Sbjct 34290 TGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGAC 34349 Query 120716 CTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGA 120775 | | |||||| |||| || | ||| || |||||| || || | |||||| ||| Sbjct 34350 CGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGG 34409 Query 120776 TGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGG 120835 |||||| ||||||| |||||||| || || || |||| | |||||| | | Sbjct 34410 CGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAG 34469 Query 120836 CCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCATGTCGC 120895 |||| |||||||| | ||| ||| || ||||| |||| | ||| || | Sbjct 34470 CCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCAC 34529 Query 120896 GCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGTGCACG 120954 ||| | ||| || | | || | ||||||||| ||| | |||| ||| | | Sbjct 34530 GCTGCTCAGGCTCACGGATGTAAGTG-TCGATGAGCAGCGAGTAGGTCTCCGAGTGGATG 34588 Query 120955 CACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTC--CAGCTCGGGCACCGCCC 121012 ||| |||| | || ||| ||| | | ||||| | || | | | || Sbjct 34589 TTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTG---AACTTCC 34645 Query 121013 G--CTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAGAACGC 121070 | ||| | ||| | ||||| || ||||||| || | || ||||||||||| Sbjct 34646 GAACTG-AAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGC 34704 Query 121071 CAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGTGCGCAAAATCGTCATA 121130 ||||| ||| ||||||||| ||||| | ||| | ||||||| | | |||| Sbjct 34705 AAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAG 34764 Query 121131 GTCCTTGGACAGGTCGACCTCCTC 121154 ||||||||| ||||||| |||||| Sbjct 34765 GTCCTTGGAAAGGTCGATCTCCTC 34788 >seq2938 Length=227349 Score = 129 bits (142), Expect = 6e-25 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| ||| | ||| || | ||| ||||||||||| | Sbjct 129143 GTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCC--GTCTTCGAGCTGCTTAC 129200 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| || ||||| |||||||||||||| |||||| || Sbjct 129201 CAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 129260 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | || ||| || |||| || | ||| ||||| || || | Sbjct 129261 TGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCG 129320 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 129321 TTTTAACAAAAATCTGCAT 129339 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || ||| ||| | || |||||||||||||| Sbjct 128915 GTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCA-TCTTCGAGCTGCTTGCC 128973 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||| || ||||| |||||||||||||| |||||| ||| Sbjct 128974 GGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 129033 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || |||| |||| ||| ||||| || || || Sbjct 129034 GACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGT 129093 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 129094 CTTGACAAAGATCTGCAT 129111 >seq2728 Length=83621 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| || | ||| ||| |||||||| Sbjct 80254 AAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGT--ACGTCCGTCCTCGA 80197 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | || || |||||||||||||| || ||||| |||||||| || Sbjct 80196 GCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGA 80137 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | ||||| | | |||||| |||| |||| ||| || | Sbjct 80136 TCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTAC 80077 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || || |||||||| Sbjct 80076 CCGTGAGGGTCTTGACAAAGATCTGCAT 80049 >seq2166 Length=204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || |||||||| || || | ||||| ||||||||||| || ||||| || ||||| Sbjct 35 GTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTT 94 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||| | | || || |||| |||| Sbjct 95 GTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCTGACGATTCGACTTCGAGAGTGAT 154 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||||||||| || || || |||||||| Sbjct 155 CGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403046371120