Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2497 168 8e-37 seq11 132 6e-26 >seq2497 Length=103896 Score = 168 bits (186), Expect = 8e-37 Identities = 909/1429 (64%), Gaps = 49/1429 (3%) Strand=Plus/Plus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 |||||||||||||| || | ||| ||||| |||| ||| || ||||| |||||||| Sbjct 43067 AACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTC 43125 Query 118214 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 || |||| ||| || || || || || ||||| ||||||| || || ||| Sbjct 43126 GTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTT 43185 Query 118274 ACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA---GTTGAG 118327 || || || ||| | | || ||||||| | ||||||| | || Sbjct 43186 GCGAAGCCCGTGCTTGGCGATCTTGG---CCTTGAGCTCCGCCCAGTCCCACAGGTCCGA 43242 Query 118328 CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTC 118387 | || ||||| ||||| || |||| | ||| || || || ||||| || | Sbjct 43243 CGGCGTGACCCCC---CACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCGGC 43299 Query 118388 AAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGT 118446 | ||||| || ||| | ||| |||| ||| | | |||| || || || |||| Sbjct 43300 GTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGCGT 43358 Query 118447 GATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 118506 | || || || ||||| || | | |||| | | |||||| | || |||||||| | Sbjct 43359 GGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACGC-A 43417 Query 118507 GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 118565 | || | || || ||||||| || || || ||||||| || || || || || Sbjct 43418 TACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGA 43477 Query 118566 CTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTT 118625 | ||| || ||||| || || ||| || ||||| | || | ||||| | | | || Sbjct 43478 CGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTC 43537 Query 118626 AGATTTTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAA-TCAAAACT 118678 || || ||| || |||| | | | | || |||| ||||| || | Sbjct 43538 AGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACGTCT----T 43593 Query 118679 GCGAGTCTCT---TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGA 118735 | ||| || ||| ||| || | || || ||||| || || || || ||||| | Sbjct 43594 G---GTCACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGC 43647 Query 118736 GGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGT 118795 ||| || | | ||||||| || || || || |||||||| || | ||| || || Sbjct 43648 CACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGT 43707 Query 118796 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGT 118855 ||| | |||||| || || ||| ||| || |||||||| || ||| | || | Sbjct 43708 GCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTT 43767 Query 118856 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG 118914 |||||||| || || |||| ||| || || | ||||| | || || ||| || ||| Sbjct 43768 GCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGC-GCTTTGACGGTGC 43826 Query 118915 CGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG 118974 || | || ||||| ||||||| ||||||| |||||||| ||||| | Sbjct 43827 GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGC 43886 Query 118975 CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAA 119034 || | || || || || | ||||| | ||| ||||| | || || ||| | Sbjct 43887 AGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGA 43946 Query 119035 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 119094 ||| |||||||||||| || || | |||||| || ||||||| || || || | | Sbjct 43947 CCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCT 44006 Query 119095 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 119154 | || | || || || |||| || | || || | || |||| |||||| |||| Sbjct 44007 CCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTT 44066 Query 119155 CCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAG 119211 | | ||| | || | | || ||| ||| |||||| || || | ||||| Sbjct 44067 CAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAG 44126 Query 119212 TGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA 119271 || ||| || || || ||||| || | || || | | || || || || || Sbjct 44127 TGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAA 44186 Query 119272 --TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTT 119329 |||||| | || | | || ||||||| | || || || || ||| ||| Sbjct 44187 TGTACGAGCC--GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTT 44244 Query 119330 TGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATT 119389 ||||| || || | |||| | ||||||| || |||||||||||| |||| | Sbjct 44245 GGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCAT 44304 Query 119390 TGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGG 119449 | | |||||||| ||| | || || || ||||| ||||||||||| || || Sbjct 44305 GGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGG 44364 Query 119450 TGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAA 119508 | |||||| | || ||| ||| ||||| || ||| ||||| | | || | Sbjct 44365 CGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGA 44423 Query 119509 TGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 |||| | ||||| || |||| | ||| ||||| | ||||| ||||| Sbjct 44424 TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGG 44472 >seq11 Length=69059 Score = 132 bits (146), Expect = 6e-26 Identities = 297/437 (68%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 129743 TTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAATGGGTTC 129802 ||||| |||||||| ||||| || ||||| || || |||||| ||||| || Sbjct 34007 TTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACAT 34066 Query 129803 TTTGAGTTCCAAATTGC--TGGCACTCCAATCTGTTTGAGGAGACGATCCGAGACGTACT 129860 | ||| || | ||| ||| ||| | | | || | ||||| | ||| |||| Sbjct 34067 GTGGAG--CCGTAGTGCACTGGGTTTCCGAGCGATACCAGCAAGCGATCGGCGACATACT 34124 Query 129861 CAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTACATGGGAGCGCGTCC 129919 ||||||| | |||| || | ||||||||||||||| | || |||| | || Sbjct 34125 CAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACG-GGGATTGATTCG 34183 Query 129920 AAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTCTCCG-- 129977 | | |||| |||||||||| |||||||| || | ||| | | | || || | Sbjct 34184 CACAGGAACGCCTTCTCAATTTCCACAGCCTCAGTGATGATCTTGAGCACCGTGTCTGGG 34243 Query 129978 TGCCAG-GTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCC 130036 ||| | | || || | | || |||||| |||||| ||| ||| |||||| Sbjct 34244 TGCGCGCGCCTCCTGAGGT--GGCT-GAAGAGAAGGCAGGCAAAGTCCGTGTGAAGACCC 34300 Query 130037 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTC 130096 |||||||| |||||||| || || ||||| ||||| ||||||||||| |||||||| Sbjct 34301 TCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTTCTTG 34360 Query 130097 AACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCA 130156 | |||||| |||| |||||||| ||||| ||||| ||||| || || ||||| Sbjct 34361 AGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGCG 34420 Query 130157 AAGAGACGCTCAGCAAA 130173 | |||||||| || || Sbjct 34421 ACCAGACGCTCGGCGAA 34437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618412487967280