Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq428 280 4e-70 seq2938 168 2e-36 seq2166 118 3e-21 seq2337 107 6e-18 seq2287 93.3 1e-13 >seq428 Length=46974 Score = 280 bits (310), Expect = 4e-70 Identities = 887/1360 (65%), Gaps = 25/1360 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| || || ||||||||||| ||| Sbjct 12634 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 12575 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || || || |||||| | || || || ||||| || || || ||| Sbjct 12574 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 12515 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | ||||| ||| | || || || || | || || || | || Sbjct 12514 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 12455 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || || || || ||||| | || || | ||||| ||| | || || Sbjct 12454 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTC----GACGACGCTGAGGTCCA 12399 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || | ||||| | ||| | | ||||| || || || Sbjct 12398 GTCTGACATGAAGCACTGGCCTTTC---GAGGTTACCTCGGTCGGTGGCAAGCCCCAGAT 12342 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTA-CCCGAAGAAATTTCATCAATGG 349553 | ||||||| || ||||| || || | ||| |||||||| || ||||| |||| Sbjct 12341 TCGCATTGAATACAAGGGTGAG-AAGAAGACTTTCACTCCCGAAGAGATCTCATCCATGG 12283 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 || | | || ||| || | ||| || || || | |||| || || | ||||||| Sbjct 12282 TTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACCGTCAAGGATGCTG 12223 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | | ||||| || || || || || || | ||||| || || || |||||||| | Sbjct 12222 TCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTA 12163 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 |||| |||| | || || | | || || || || ||||||||||| || || || | Sbjct 12162 TCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTT 12103 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || || || || | || || || || ||| |||| ||||| ||| | ||||| | Sbjct 12102 ACGGTCTCGACAAGAAGACCGAGGGTGAGAAGAATGTTCTCATTTTCGATCTCGGTGGAG 12043 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| || |||||||| || || || |||| ||||| || || || || || || || | Sbjct 12042 GTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGGCCACCG 11983 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 ||||||| || ||||||||||| || || ||||| || |||||||| || ||||| Sbjct 11982 CTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTCC 11923 Query 349914 AAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGC 349972 | || || ||||| |||| || | ||| | || || | || | ||||| Sbjct 11922 AGGAGTTCAAGCG-CAAGAACAAGAAGGACTTGACCACCAACGCTCGTGCCCTTCGTCGT 11864 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | ||||| ||||| ||||| |||||| | | || || || | || || | || Sbjct 11863 CTTCGCACTGCTTGTGAGCGTGCCAAGCGTACTCTCTCGTCGGCTGCTCAGACGACCATC 11804 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || ||| || | || |||| | || || || ||||| || || Sbjct 11803 GAGATCGACTCGCTCTTTGAGGGTATCGACTTCTACACCTCGATCACCCGTGCCCGTTTC 11744 Query 350093 GAAGAATTATGTATGGATCT-TTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 || || | ||| || || || | | | || || || ||||| || || || | Sbjct 11743 GAGGAGCTCTGTGGTGACCTCTTCTCGCAC-ACCATTGAGCCTGTCGAGAAGGTTCTCCG 11685 Query 350152 AGA-TGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 || | ||| | || | | || | || | || | || | || ||||||||||| | Sbjct 11684 CGACTCCAAGATTGACAAGGGCTCTG-TTCACGAGATCGTCCTTGTCGGTGGTTCTACTC 11626 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270 |||| || || || || || | || | || || || || || || | | | | Sbjct 11625 GTATCCCCAAGGTGCAGAAGCTGCTCACCGACTTCTTCAACGGTCGTGAGCTTAACAAGT 11566 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 | || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | || | Sbjct 11565 CGATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTTTCGG 11506 Query 350331 GAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | | | | ||| || | | | || || | || || ||||| |||| || ||| Sbjct 11505 G---TGACACTTCAGAGAAGACTCAGGACCTGCTCCTTCTCGATGTTGCTCCTCTCTCGA 11449 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTAC 350447 | || | || || |||||| || | || ||| || || || | ||||| | Sbjct 11448 TGGGTATCGAGACCGCTGGTGGTGTCTTCACACCTCTCATCAAGAGGAACACCACTGTGC 11389 Query 350448 CTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTC 350507 | || || ||||| | | || || || | ||| || || ||||| | ||| || | Sbjct 11388 CCACCAAGAAGTCGGAGATCTTCTCGACTTATGCCGACAACCAGCCCGGTGTATTGATCC 11329 Query 350508 AAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA 350547 | || || || || || ||||| ||||| ||||| || || Sbjct 11328 AGGTGTTCGAGGGCGAGCGTGCCCGCACCAAAGACAACAA 11289 >seq2938 Length=227349 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | || | ||||| ||||| || |||||||| ||||| || || || Sbjct 129109 CATACCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTC 129168 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 129169 GGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGG 129228 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || || || || || || || | || || | || Sbjct 129229 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTC 129288 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| ||||| || || || ||||| |||||||||||||| Sbjct 129289 GACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTTTTAACAAAAATCTGCAT 129339 Score = 134 bits (148), Expect = 4e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| || || || ||||| || || || || | || || ||||||| Sbjct 128902 GACCAAG-TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTT 128960 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||| ||||||||||||||||| ||||| || || | Sbjct 128961 CGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTT 129020 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || || || || | || || | || ||||| || || | |||| Sbjct 129021 GGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCT 129080 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||| |||||||| Sbjct 129081 TGCCTGTGAGCGTCTTGACAAAGATCTGCAT 129111 >seq2166 Length=204 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || || |||||||| || || ||||||||||| Sbjct 3 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGATG 62 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| ||||| ||||| || || || || || ||||| || || || || ||||| || Sbjct 63 AGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG 122 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || | ||| ||||| || || | ||||| ||||| || || || ||||| Sbjct 123 ATTGTGTCTGACGATTCGACTTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAG 182 Query 140730 ATCTGCAT 140737 |||||||| Sbjct 183 ATCTGCAT 190 >seq2337 Length=130298 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || || || || || || || || || Sbjct 31632 ATACCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCC 31573 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || || || ||||| || || ||||| || || Sbjct 31572 GAGAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGG 31513 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || |||||||| || || || ||||| || || | || || | || Sbjct 31512 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCC 31453 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || ||||| |||| ||||| || ||| |||| Sbjct 31452 ACCTCAAGGGTAATGGTCTTACCTGTTGGTGT 31421 >seq2287 Length=306898 Score = 93.3 bits (102), Expect = 1e-13 Identities = 226/341 (66%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || ||||| || | |||||| || || | || | | || || | || ||| | || Sbjct 305362 AAGATGAAAGAGACTGCTGAGGCTTACCTCGGCCACAAGGTCACCCACGCCGTTGTCACC 305303 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || |||||||| || || || ||||| || || || |||||||||| ||| || Sbjct 305302 GTTCCCGCCTATTTCAACGACGCTCAGCGACAGGCCACTAAGGATGCTGGCACCATCGCT 305243 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || || |||| | || || || || ||||| || || || || || || Sbjct 305242 GGTCTTAACGTGCTGCGAATCGTCAACGAGCCTACCGCTGCTGCCATCGCTTACGGTCTC 305183 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| ||| | || || ||| ||| | || ||||||||||| Sbjct 305182 GACAAGAAG---GACGGTGAATCGCAGATCATTGTTTACGATCTTGGCGGTGGTACTTTC 305126 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 || || || || || | |||| ||| | || || ||| || ||||| || || Sbjct 305125 GACGTGTCGCTCCTCTCGATTGACTCGGGCGTCTTCGAGGTTCTTGCCACTGCCGGCGAC 305066 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTC 349902 || || |||||||| || || ||||| || || |||||| Sbjct 305065 ACTCACCTTGGTGGTGAGGACTTTGACAACCG---CGTTTC 305028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515197361089214