Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2938 95.1 8e-15 seq2728 95.1 8e-15 seq2166 93.3 3e-14 >seq2938 Length=227349 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||||||| | || || || ||| || |||||||| || || || || ||||| Sbjct 129122 AGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGG 129181 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || ||||| || || || | |||||| || || || || | || ||| Sbjct 129182 CCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCC 129241 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | || ||| | || ||||| | ||| ||||| | || Sbjct 129242 TTGTCCTGGATCTTG-GCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGT 129300 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | |||||| |||||||||||||| Sbjct 129301 AATGGTCTTGCCCGTGAGCGTTTTAACAAAAATCTGCAT 129339 >seq2728 Length=83621 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| || || || |||||| || ||||| || || ||||| || || Sbjct 80266 AGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGT 80207 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || ||||| || || || | |||||| ||||| ||||| | |||||| Sbjct 80206 CCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCC 80147 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| |||||| || | || Sbjct 80146 TTGTCCTGGATC-TTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGT 80088 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || ||||| || | || || ||||| |||||||| |||| Sbjct 80087 GATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTTGA 80044 >seq2166 Length=204 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 |||| || ||||| || || || || || || |||||||||| || ||||| ||||| | Sbjct 1 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAGA 60 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT- 34635 | | |||||| ||||| || || | ||||||||||| |||| || | || || | Sbjct 61 TGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATC-TTGGCCTTGACATTG 119 Query 34636 AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||||||||| || | || ||||| | || ||||| || ||||| | || || || Sbjct 120 TCGATTGTGTCTGACGAT-TCGACTTCGAGAGTGATCGTCTTGCCGGTCAGAGTCTTGAC 178 Query 34695 AAAAATCTGCAT 34706 ||| |||||||| Sbjct 179 AAAGATCTGCAT 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314718330516554