Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001662005.1_202016-06-13] 2,938 sequences; 20,208,930 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2938 113 3e-20 seq2728 95.1 8e-15 seq2166 82.4 5e-11 >seq2938 Length=227349 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| |||||||| || || || ||||||||||| || ||| || Sbjct 129339 ATGCAGATTTTTGTTAAAACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129280 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || ||||| Sbjct 129279 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 129220 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || || ||||||| || || | ||| |||||| Sbjct 129219 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 129160 Query 23791 ATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 129159 ATTCAGAAAGAGTCGAC 129143 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || |||||||||||||| || || || Sbjct 129111 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 129052 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || ||||| Sbjct 129051 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 128992 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| || || ||||| | |||||| | || |||||| Sbjct 128991 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 128932 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 128931 ATTCAGAAGGAATCCAC 128915 >seq2728 Length=83621 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 23604 ACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663 ||| || |||||||| || || || ||||||||||| || || ||||||||||| || || Sbjct 80042 ACTCAAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGA 80101 Query 23664 CTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722 || ||||||| | || ||| | || | || || ||||| || || | |||| Sbjct 80102 GTCTTCGGACACCATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCGC 80160 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGG 23780 | || || |||||| | || || || || || || || || |||| ||| | |||| | Sbjct 80161 CCGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCG- 80219 Query 23781 CGATTACAACATACAAAAAGAGTCCAC 23807 || |||||||| || || ||||| || Sbjct 80220 -GACTACAACATCCAGAAGGAGTCTAC 80245 >seq2166 Length=204 Score = 82.4 bits (90), Expect = 5e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || ||||||||||||||||| || || | Sbjct 190 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACTCTCGAAGTCGAATCGTCA 131 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || ||| | || || || || Sbjct 130 GACACAATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCA 72 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || ||||||| ||||| | || ||||| Sbjct 71 GCAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAA 12 Query 23790 CATACAAAA 23798 ||| || || Sbjct 11 CATCCAGAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997496932504