Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2408 390 1e-103 seq1972 140 3e-28 seq2311 114 1e-20 seq1866 102 8e-17 >seq2408 Length=74372 Score = 390 bits (432), Expect = 1e-103 Identities = 435/574 (76%), Gaps = 15/574 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||||| Sbjct 34837 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34778 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||||| | |||||||||| |||||||| || ||| | Sbjct 34777 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATCTCG 34718 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || ||||| || || ||||| || || || |||||||||||||| || || |||||| Sbjct 34717 CATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCGT 34658 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||| || |||| |||||||| || ||||||||||| || |||||| ||| Sbjct 34657 TTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATG 34598 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC----GTGCGCTCTTC 116928 |||||| | |||||||| | || ||| ||||||||||| ||| ||| || || Sbjct 34597 GAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGC-CTGA 34539 Query 116929 GGAG-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | || | ||| || ||||| ||||| ||||||| || ||| |||||| |||||| Sbjct 34538 GCAGCGTGAATATCTGTTTG----ACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGG 34483 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTG 117046 |||| ||||| || || |||||| || || || | ||| | |||| |||||| ||||| Sbjct 34482 CCGACTGGGCTCTTCGATGGATCAGCGACA-AGCGTGCCACTTTCGCCGAGCGTCTGGTC 34424 Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || || || |||||||||||| |||| || |||||| |||||| | || || |||||| Sbjct 34423 GCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTC 34364 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| ||||| ||||||||||| || || ||| ||||||||||||||| | |||||| Sbjct 34363 AAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAG 34304 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||| || ||||||||||| | || |||| Sbjct 34303 GGTCTTCACACGGACTTTGCCTGCCTTCTCTTCA 34270 >seq1972 Length=278426 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||||||||| ||||| || |||| ||||| || | Sbjct 201768 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 201827 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | || || Sbjct 201828 GACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 201886 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 201887 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 201946 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| ||| | ||||| || || |||||||| Sbjct 201947 CATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCG 201982 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| |||||||| |||| ||||| | | Sbjct 201996 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 202055 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| || ||||| || | || || Sbjct 202056 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 202114 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || || | ||||| || |||||||| Sbjct 202115 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAA 202174 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| |||||||| |||| || || Sbjct 202175 CATTCAGAAGGAATCCACTCTTCA 202198 >seq2311 Length=83875 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || |||||||| |||| || || | Sbjct 80310 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80369 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||| || | ||| Sbjct 80370 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80429 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || ||||| || |||| || || || |||||| Sbjct 80430 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTAC 80489 Query 40867 AACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||||| | || ||||| Sbjct 80490 AACATCCAGAAGGAGTCTACCCTGCA 80515 >seq1866 Length=288946 Score = 102 bits (112), Expect = 8e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || || || ||||| ||| | || || || || | |||| | | | | |||||| Sbjct 192436 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 192377 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| || ||| | |||||||| || || |||| ||| || || Sbjct 192376 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 192317 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | ||||||||| |||||||||||||||||||| | || || || Sbjct 192316 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 192257 Query 40894 CTAGTG 40899 || ||| Sbjct 192256 CTTGTG 192251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203067198800