Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 459 2e-124 seq2408 196 4e-45 seq1972 105 6e-18 seq2311 89.7 5e-13 seq611 84.2 2e-11 >seq3 Length=70329 Score = 459 bits (508), Expect = 2e-124 Identities = 1244/1881 (66%), Gaps = 44/1881 (2%) Strand=Plus/Minus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 ||||| || || ||||| | ||||| ||||| || ||||| ||| | |||||||| || Sbjct 24240 GTAAATTGGATCGCGTTCGACGCCGGCTTGGTTCGCAGATAGTACGTACCCGTCTTGAGT 24181 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 ||| | ||||| ||||||| || ||||| || | | |||| | |||| | | Sbjct 24180 CCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGTGCCGAAAGG 24121 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATC 22294 | | |||| |||||| ||| ||||||||||||||| || || ||||| | | Sbjct 24120 TGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGT----C 24065 Query 22295 AATGTACGCATC--GAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGAT-CTCTAACG 22349 ||| ||| | | | || ||||| || ||||||||||| | | |||| | | | | Sbjct 24064 GATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCA-G 24006 Query 22350 GTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTAT 22409 | || | | |||||| || ||| | ||||| || || ||||| | Sbjct 24005 GAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGT 23946 Query 22410 CGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG-TTCACCACTTGAAAC 22468 ||||||||| || | || || | || | |||| |||||||| || ||| Sbjct 23945 CGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACA-ACCACGGGTTCACCACCTGGAAC 23887 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || | | || || || ||| |||||||| || | || ||||| | || || Sbjct 23886 TCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTA 23827 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 ||||| |||||| |||||||||||||||||||| |||| ||| |||||||| | Sbjct 23826 AAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGA 23767 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||||| | || || ||||||| || |||||||||||| || |||||||| Sbjct 23766 AGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTG 23707 Query 22649 ACATTGTCCCACATATCGTATTGCAA--CACGCCGCGACTCGCCGGGCTGCCTTCGTACG 22706 || ||||||| ||||| ||||| ||| | |||| || || ||| |||||| Sbjct 23706 AC---CCCCCACATGTCGTACTGCAACTCACCCTGCGA--AGCGGGCGAGCCGGCGTACG 23652 Query 22707 TTTCGTACGGACCATATATCGCGGCAAGTTCGCA-GCTCGCCTCCAACGCGCCGTAATAT 22765 | ||||| || | | | || || ||||| | ||| ||||| ||| ||| || Sbjct 23651 TCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCG-CTCCAGTGCGGCGTGGTAG 23593 Query 22766 ATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GCGGCGACGCTTTCGTACGGCATA-C 22823 || ||||| ||||| | | |||| | ||| || || || | || || ||||| | Sbjct 23592 ATGGTCTCAAAGATCTGCACGTTC-AGTCGCCGAGCCTCGGCCGACTCAAAC-GCATACC 23535 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 ||| |||| |||||| ||||| | |||||||| || || |||||||| |||| || Sbjct 23534 CCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCA 23475 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 || ||| ||||| | ||||| | || ||||| | |||||| || Sbjct 23474 TGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGT 23415 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-----CGA 22998 | || | || | | | |||||||| ||| | | Sbjct 23414 TCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGT--ACGTCTTGGTCAC 23357 Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 | | ||| ||| || | ||||||||||| || ||||| || ||||||||||| Sbjct 23356 TGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTC--G 23299 Query 23059 GGA-CG-TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 ||| || ||||||| | || |||||||| | ||| ||||| |||||||| | || Sbjct 23298 GGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTC 23239 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||||||| || || ||| | |||||||| || ||| | || ||||||||||| Sbjct 23238 TTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCG 23179 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG 23236 ||| ||||||| ||| || ||| | |||| || | || ||| | | Sbjct 23178 GTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGA 23119 Query 23237 CCTTCTTCCTCGTACTTTTGGTACA-ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 || || ||||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| Sbjct 23118 CCCTCGGCCTCGTAGCGCTCGTAGAGGCGC-TCAAACTCGTCACCGTAGCAGTCGGCCAG 23060 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCAT 23355 || || | | | || |||||||| ||| || | || || | |||| Sbjct 23059 ACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCAT 23000 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || ||||| || | ||| || || ||||| || || || || ||||||||||| || || Sbjct 22999 GAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCC 22940 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 | |||||| || || | || || || ||||||| ||||| || || | ||||| Sbjct 22939 GTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAAT 22880 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTA 23535 ||||| || || || | ||| ||||| ||||| |||||||| || || ||||||||| | Sbjct 22879 AGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAA 22820 Query 23536 CACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACC 23595 || | ||||| ||||| | |||||| | ||| ||| || | ||| || Sbjct 22819 GACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC 22760 Query 23596 TTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 | | || | | || | || || || ||||| ||| ||| || || ||||| || Sbjct 22759 GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGC 22700 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 || || || || ||||||||||| ||||| ||| || || | | || | ||| Sbjct 22699 ACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAA 22640 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 ||||| || | |||| | || ||| |||| ||| || || || |||||| || Sbjct 22639 GCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGT 22580 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 |||||| | |||||| || |||||||| ||||||||| || ||||||| ||||| Sbjct 22579 AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTG 22520 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTT 23892 || |||| ||||| ||||| | ||||| || || | || ||||| | |||||| Sbjct 22519 GATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTT---GCCGTT 22463 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 || || || ||| ||||| | | ||| || || || ||| ||| |||| ||||| Sbjct 22462 GATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTC 22403 Query 23953 ACGATCGTGCACTATGGCCGA 23973 ||| |||| | |||||||| Sbjct 22402 ACGTTCGTAGATGATGGCCGA 22382 >seq2408 Length=74372 Score = 196 bits (216), Expect = 4e-45 Identities = 563/855 (66%), Gaps = 47/855 (5%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||||| || || | ||||| Sbjct 34837 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34778 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | || || || |||| | | ||||| Sbjct 34777 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATCTCG 34718 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | ||||| ||||| || || |||||||| || |||||||| | || || | Sbjct 34717 CATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG- 34659 Query 57747 TTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||||| || | | ||||| | ||||| ||||| || || | | Sbjct 34658 -TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 34600 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || | || ||||| |||||||| || ||| | || | Sbjct 34599 TGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGA----G 34544 Query 57865 AC-GAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG--- 57917 | ||| | ||| | ||||| |||| |||| || || || | ||| |||| Sbjct 34543 CCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGG---TCGTCAAGCAG 34487 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG---GCCACGTTCGCCGAGAGG 57974 ||||| || ||| | | |||||| | ||| || | ||||| ||||||||| | Sbjct 34486 AAGGCCGACTGGGCTCTTCGATGGATCA---GCGACAAGCGTGCCACTTTCGCCGAGCGT 34430 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || ||||||| ||||||||||| || || || || |||||| || || | || || Sbjct 34429 CTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTC 34370 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| ||||| || |||||||| || ||||| ||||||| | || ||||| Sbjct 34369 TGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 34310 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 ||||||||||| || || || ||||| ||||| | | | ||| ||| | | Sbjct 34309 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCTTCAGCCAC---CTCAGGA----G 34257 Query 58155 ACGCGGGATCGCA-------TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207 |||| | | || | | | || ||||| ||||| || | ||||| || | Sbjct 34256 GCGCGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATCGAGAAGGC 34197 Query 58208 GTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAA 58267 ||| | |||| | | || || || | |||||||||||| | | |||| | Sbjct 34196 GTTCCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCA 34137 Query 58268 GTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGC--GT-CATTA 58324 |||||||||| ||| ||||| | ||||| | | | | ||| | | || || || Sbjct 34136 ATACATTGAGTATGTCGCCGA---TCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACTA 34080 Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384 | | | | | ||||||||| ||||||| || ||| | || |||||||| ||||| Sbjct 34079 CGGCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTT 34020 Query 58385 TTTCGaaaaaaaaGT 58399 || || ||||| || Sbjct 34019 CTTTGAGAAAAAGGT 34005 >seq1972 Length=278426 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| || ||||| |||| || || | || Sbjct 201996 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 202055 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || || || ||| Sbjct 202056 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 202115 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | ||||| | ||| || || || ||| Sbjct 202116 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 202175 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || ||||| |||||||| |||| ||| Sbjct 202176 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTT 202208 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || ||||| || || || |||| || || | || Sbjct 201768 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 201827 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||||||| | || || || ||| Sbjct 201828 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 201887 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | |||||| || | ||| || ||| Sbjct 201888 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 201947 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| ||||| ||||| || || Sbjct 201948 ATTCAGAAAGAGTCGACGCTTCACCTTGT 201976 >seq2311 Length=83875 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| || || || || || ||||| |||| || || | Sbjct 80310 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80369 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | ||||||||| Sbjct 80370 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80429 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||| || |||||||| || ||| | || ||| Sbjct 80430 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGAC 80468 >seq611 Length=45555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||||||||| ||||| ||||||||| | || || || | || Sbjct 45425 CATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTC 45484 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||| || | || || ||||| Sbjct 45485 CGACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCA 45544 Query 31312 GCAGCGTCT 31320 ||||||||| Sbjct 45545 GCAGCGTCT 45553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752441939600