Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2311 102 7e-17 seq1972 91.5 1e-13 >seq2311 Length=83875 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || || |||||| || |||||||| || | Sbjct 80540 ACCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 80481 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || ||||||| ||||||||||| || | || | ||||||||| || || Sbjct 80480 -AAGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCG 80422 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||||| | | ||||| || | ||||||| Sbjct 80421 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCA 80362 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||| ||||| ||||| || || ||||| ||||||||| || Sbjct 80361 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTTG 80309 >seq1972 Length=278426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | | ||||| | ||||| || ||| || ||||||||||| || | Sbjct 201995 ACCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGA 201936 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| |||| || ||||||||||| || | || | |||||||||||| || Sbjct 201935 GAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGG 201876 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||||||| || || ||||| | | || ||||| || | ||||| Sbjct 201875 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAGGACTCG 201818 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || ||||| || || ||||| || || ||||||||||||||| Sbjct 201817 ACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCATC 201767 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || || ||||| ||| ||||| ||||||||||| || | || | || || | || || Sbjct 202204 ACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTG-CGACCATCTTC 202146 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| | | || | |||||||||||| || | | ||||||||| Sbjct 202145 GAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG 202086 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || ||||| || | |||||| |||| || ||||| Sbjct 202085 GATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTC 202028 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || ||||| |||||||| Sbjct 202027 TTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 201996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238339332505