Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1208 165 1e-36 >seq1208 Length=23384 Score = 165 bits (182), Expect = 1e-36 Identities = 185/246 (75%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| |||||||| || ||||||||||| |||||||||||||| || || Sbjct 22447 CAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTATCCGTCGTCTTGCGCG 22389 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 ||| ||||| ||||||||| ||||||| | |||| || |||| |||| |||| |||| Sbjct 22388 TCGAGGTGGTGTCAAGCGTATCTCTGGTCTTATCTACGACGAGACCCGTGGTGTTCTGAA 22329 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | |||||||| || | || || | ||| | || || || |||||||| || || || Sbjct 22328 GCTCTTCCTCGAGTCGGTGATTCGTGACTCGGTCACTTACACTGAGCACGCCAAGCGCAA 22269 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 ||| |||||||| | || | || || ||| | || || || ||||| | | || || Sbjct 22268 GACCGTCACCTCGCTCGACGTTGTTTACGCACTCAAGCGCCAGGGCCGCACCCTGTACGG 22209 Query 16687 TTTTGG 16692 ||| || Sbjct 22208 TTTCGG 22203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072909660965