Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 250 2e-61 seq2408 134 1e-26 seq1972 122 8e-23 seq2311 113 4e-20 seq1866 98.7 9e-16 >seq3 Length=70329 Score = 250 bits (276), Expect = 2e-61 Identities = 992/1522 (65%), Gaps = 67/1522 (4%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||| ||||| || || | |||||| || | || | ||| ||||| | || Sbjct 23901 TTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGC 23842 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||||||| ||||||||| ||| |||| ||||| ||||| |||| | Sbjct 23841 TCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGC 23782 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| || |||||||| ||| | |||| ||| |||| ||||| Sbjct 23781 AGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCAC 23722 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC----GCTGGCGGG 145293 || | |||| | || ||||||||||||||||||| |||| || |||| | Sbjct 23721 AGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAG 23662 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG----GCGAGCTCGCAAC-TCGCC 145348 | || | | | ||| ||||| || || || |||||||| |||| Sbjct 23661 CCGGCGT----ACGTCTCGTAGCTGCC----GTGCTGCTCAGCCAGCTCGCACGATCGC- 23611 Query 145349 TCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCG 145408 ||||| ||| || || || ||||| || ||| ||| || || || || | Sbjct 23610 TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCC 23551 Query 145409 CTCTCGTACGGCATGCGC-AGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| ||| ||| | | | | | || ||||| || || ||||| | || | || Sbjct 23550 GACTCAAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCC 23492 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTC 145527 ||| || || || ||||||| | | | |||| ||||| ||||| ||| ||| Sbjct 23491 GATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTC 23432 Query 145528 GATAATTTTATTCAAGTT-TCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTTCAA 145583 ||| || || |||| ||| | ||| | |||| | || ||||| | ||| || Sbjct 23431 GATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTGGCAACGCTGTGCAGACGCTT---AA 23376 Query 145584 AGTCAAACCGA---GCCTC---GTCAACGACCACACAGCTATTGACGGCGATCGACGCCA 145637 |||| || | | | ||||| || || | | || ||||||| || | Sbjct 23375 AGTCGTACGTCTTGGTCACTGGGTCAATGA--ACGTGGGCAGTG----CGATCGAGGCGA 23322 Query 145638 AATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGC 145697 || || |||||| ||| |||| ||||||| | | |||||||| ||||| ||| Sbjct 23321 GGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGG 23262 Query 145698 TACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGA 145757 || ||||| || || || || | ||| || || || | |||| ||||||||||| | Sbjct 23261 AGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACA 23202 Query 145758 GCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTG 145815 | ||| | || ||| ||||| ||| | ||| | ||| || || || | ||| Sbjct 23201 GGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG--CGTACCAGAGCTTCTG 23144 Query 145816 CGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 ||| || ||| ||| |||| ||||| | ||||| | |||||| ||||| Sbjct 23143 CGCTTTGACGGTGC-GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAA 23085 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || || ||||||||| |||| ||| || || |||| |||||| ||||| |||||||| Sbjct 23084 ACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGT 23025 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 ||||||| | ||| | || ||| || | ||| |||||||| || || || | | | Sbjct 23024 CGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCT 22965 Query 145995 CGCGCGCTTTGCAA-TCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGA 146051 | ||||| ||| ||||| || ||| | || || | || | ||| | ||| Sbjct 22964 CACGCGCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG-CAGGTCGAGGA-ACTCAAAGA 22908 Query 146052 TGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCT 146108 ||||| |||||| |||||||| || | || | ||| || || ||| ||||||| Sbjct 22907 CGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCT 22848 Query 146109 GGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTA 146168 |||| |||| || | ||||||| |||||||| | ||||||| | | |||| || | Sbjct 22847 GGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA 22788 Query 146169 CGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGA 146228 | ||||| || | || | |||| | || | |||||| | || | ||||| Sbjct 22787 CACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGA 22728 Query 146229 GACCGCCG-CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTC 146286 || ||| |||| |||||| || ||| || ||| ||| || |||||||||||||| Sbjct 22727 TGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTT-GAGGGTATCGTAGATGCCGTC 22670 Query 146287 AAT---GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGT 146343 || | ||| |||| ||| | || |||||||| | | ||||| ||| || Sbjct 22669 GATCGAGTCATC-CTTC--ATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGT 22613 Query 146344 CCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATA 146403 || || ||| | ||| || ||||| ||||| ||| | ||| | || Sbjct 22612 ACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTA 22553 Query 146404 CGTTTCGATAGCG-TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCA 146462 ||| ||||| ||| ||| || |||| | ||| || ||||| | |||||| |||||||||| Sbjct 22552 CGTCTCGATGGCGCTCTCGA-TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 22494 Query 146463 TGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGG 146522 |||| ||||| ||||| || || | || || | ||||||| ||| || | Sbjct 22493 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCG 22434 Query 146523 TTTTGTATCCGAAAAATTTGTA 146544 | ||| | |||||||| ||||| Sbjct 22433 TCTTGAAGCCGAAAAAGTTGTA 22412 >seq2408 Length=74372 Score = 134 bits (148), Expect = 1e-26 Identities = 329/488 (67%), Gaps = 17/488 (3%) Strand=Plus/Minus Query 46100 AGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTA 46159 |||| |||||||||| | ||||||| | || || ||||||||||||||| Sbjct 34488 AGAAGGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTC 34429 Query 46160 TGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTT 46219 |||| || ||||| || |||||| ||||||| || ||| || ||| | ||||| | Sbjct 34428 TGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCT 34369 Query 46220 ACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 |||| || | || | |||||||||| || ||||| ||||||||| || ||||| Sbjct 34368 GGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 34310 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAG 46338 |||||||| || || ||||||||||| || || || || | | | || || | Sbjct 34309 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT---TCAGCCACCT-CAGGAGGCG 34254 Query 46339 CTTGCGCCC-GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTT 46397 | || ||| ||||| ||||| | || ||| ||||| |||| || ||||||| ||| Sbjct 34253 CGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCCGTGGAAATCGAGAAGGCGTT 34194 Query 46398 TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC-GCACAGTCAATGTGCGACT 46456 | | || | |||| || || | || |||||| ||| || |||||| | | Sbjct 34193 CCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAAT 34135 Query 46457 ACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACG 46516 |||| |||| ||| || || || |||| || ||| | || ||| | ||| Sbjct 34134 ACATTGAGTATGTCGCCGATCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACT---ACG 34078 Query 46517 CGCGCAA----TCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTT 46572 || | | ||| ||||| ||||||| |||||| || |||| ||||| || || || Sbjct 34077 -GCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTC 34019 Query 46573 TTCGAAAA 46580 || || || Sbjct 34018 TTTGAGAA 34011 >seq1972 Length=278426 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||| ||| | || | |||||||| || ||||||||||| ||| Sbjct 201994 CCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 201935 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| | ||||||||| || ||||| Sbjct 201934 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 201875 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | |||||||| Sbjct 201874 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 201815 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || || || || || || || ||||||||||| Sbjct 201814 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 201768 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || || || | || || ||||| ||||||||||| || Sbjct 202223 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 202164 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| || |||| | ||||||||| || ||||| Sbjct 202163 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 202104 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || | ||||||| Sbjct 202103 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 202044 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || |||||||| Sbjct 202043 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 201996 >seq2311 Length=83875 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| || Sbjct 80539 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80480 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 80479 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80420 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 80419 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 80360 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| ||||| || || || || || || |||||||| Sbjct 80359 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80313 >seq1866 Length=288946 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | |||||| ||||| || |||||||| || Sbjct 192234 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 192293 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 192294 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 192353 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||| | Sbjct 192354 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 192413 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||||| ||| ||||| ||| Sbjct 192414 TCAAGGGTAATGGTCTTACCTGTT 192437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471998020099200