Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1972 185 2e-41 seq2311 167 4e-36 seq1866 127 4e-24 seq3 102 2e-16 seq533 98.7 2e-15 >seq1972 Length=278426 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| || | ||| ||||| |||||||| || ||||| || |||||| Sbjct 201994 CCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 201935 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| ||||| | || || || || ||| Sbjct 201934 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 201875 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||||| ||||||||||| | || || ||| Sbjct 201874 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 201815 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || |||||||| ||||| || || |||||||| Sbjct 201814 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 201768 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | |||||||| || ||||| || || || ||||| || || || Sbjct 202222 CCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGAC 202163 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || | || || || || ||| Sbjct 202162 AGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGA 202103 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| ||||| ||||||||| ||||||||||| | || || ||| Sbjct 202102 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACT 202043 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||| |||||||| || |||||||| Sbjct 202042 TCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 201996 >seq2311 Length=83875 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || || || Sbjct 80539 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80480 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || |||||||| ||| Sbjct 80479 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80420 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 80419 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 80360 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||||||||||||||| || |||||||| Sbjct 80359 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80313 >seq1866 Length=288946 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || || || |||||||| || || ||| Sbjct 192234 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 192293 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || |||||||| ||| Sbjct 192294 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 192353 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| |||||||| ||||||||||| | || || || Sbjct 192354 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 192413 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||| ||||| || || || Sbjct 192414 TCAAGGGTAATGGTCTTACCTGT 192436 >seq3 Length=70329 Score = 102 bits (112), Expect = 2e-16 Identities = 218/326 (67%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 ||||| ||| ||||| | || |||| |||| ||||||| ||| | ||| || | Sbjct 23316 CACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCAC 23257 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTTCACGCTGTCCTTGTTGAGCACG 31820 |||| |||||| || ||| || |||| ||| || |||||||| || | | Sbjct 23256 TTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATG 23197 Query 31821 TAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTG 31880 |||| ||||||||||| |||| | || || || | ||||| | |||||||| Sbjct 23196 AAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG 23137 Query 31881 ACGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTG 31940 ||| ||||| || ||||||| ||||||||| || ||| ||| |||| | Sbjct 23136 ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCA 23077 Query 31941 CCAAAGGCATCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCG 32000 || || |||| ||||| || ||||| |||||| | ||||||||| || | | Sbjct 23076 CCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTC 23017 Query 32001 GCCTCTACTCGCTTCATGAACAGGTC 32026 ||| || | ||||||||| || || Sbjct 23016 TGCTCGACCCTCTTCATGAAGAGATC 22991 >seq533 Length=48252 Score = 98.7 bits (108), Expect = 2e-15 Identities = 359/549 (65%), Gaps = 26/549 (5%) Strand=Plus/Minus Query 225458 GAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGA-TGAG 225516 |||||||| ||||||||||||| | | || | ||| ||||| || | ||| Sbjct 25882 GAGTCGTGCGACACAATGATGGCGGTGGCAGTCTTGAGGTTGACGAGGTA-GTCAGTGAT 25824 Query 225517 CCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGC 225576 ||| |||||| ||||||| |||||| ||||| || || || |||| ||||| || Sbjct 25823 CCACTTGACGTTGACAACGTCCAAGTGGTTGGTAGGCTCATCGAGCAGCAAAATGTCGGC 25764 Query 225577 ATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCC 225636 | | |||||||| || | || | | |||||| ||||| || || || || | | Sbjct 25763 CTTGAACAGGATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCAGAGAGACCGGC 25704 Query 225637 GATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGATAAT 225693 ||| | |||| || | || ||||| |||||| ||| |||| || || | Sbjct 25703 GATGGGC---GAGTTCTGACGGGCATCGTCGAAGCCGACCTCGTGGAGGGTAGCGACA-- 25649 Query 225694 GCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA--TCATATACG 225751 || |||| | | | || | ||| | | |||| | || | ||| || || Sbjct 25648 GC-CTCGTCGCGGGT-CATGCTGAGACGCTCG--TCGG-CAAG-GATAAACTCGAGAACA 25595 Query 225752 GTCATGTCCGAGAC----AGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTG 225807 |||||| |||| ||| |||| | |||||| ||||||||| || |||| || Sbjct 25594 GTCATG----AGACCCTCAGAGCCGTCCAAGTCGTGCTCCACGTACCAGGTTCGGACCTC 25539 Query 225808 AGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTT 225867 | | |||||||| || | |||||| || | || || || | |||||| ||| Sbjct 25538 ATCGGGCGAAGGGAAGCCTTCGACCTGGCCGTTGGTGATGGCGCGCATGAGGGTAGACTT 25479 Query 225868 GCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGT 225927 || | ||||| ||||| ||| ||||| | | || ||||||| | ||| | Sbjct 25478 TCCGGAACCGTTACGACCGCAGAGACCGTACTTGTGACCACGCTTGAGGCGGAGAGTGGC 25419 Query 225928 GGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTC 225987 | ||| || || || ||| |||| ||||| || ||||||| || | ||| ||||| || Sbjct 25418 AGTGTTGAGCAGAATTTTGGCACCGTAGGCGAGCGAGAACTGACAGTTGCAGAGGTCTTC 25359 Query 225988 ACCCTCCTC 225996 ||||||||| Sbjct 25358 ACCCTCCTC 25350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921593541698600