Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1972 140 8e-28 seq2311 105 2e-17 >seq1972 Length=278426 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||||| | || || |||| ||| ||||| || || || ||||||| | Sbjct 201994 CCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 201935 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| | || || || |||||||| |||||||| ||| | || Sbjct 201934 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 201875 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | || || || ||| Sbjct 201874 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 201815 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || || || ||||| || || |||||||| Sbjct 201814 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 201768 >seq2311 Length=83875 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||| |||||||| || | || || || |||||| Sbjct 80503 TCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAG 80444 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || || || || || || |||||||| || || || || || Sbjct 80443 ATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 80384 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || || || |||||||| Sbjct 80383 TCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACA 80324 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 80323 AAGATCTGCAT 80313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179616538623390