Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 176 5e-39 seq2408 116 4e-21 >seq3 Length=70329 Score = 176 bits (194), Expect = 5e-39 Identities = 913/1431 (64%), Gaps = 53/1431 (4%) Strand=Plus/Minus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 113973 |||||||||||||| || | ||| ||||| |||| ||| || ||||| |||||||| Sbjct 23889 AACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTC 23831 Query 113974 ATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 || |||| ||| || || || || || ||||| ||||||| || || ||| Sbjct 23830 GTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTT 23771 Query 114034 ACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTGAG 114087 || || || ||| | | || ||||||| | ||||||| | || Sbjct 23770 GCGAAGCCCGTGCTTGGCGATCTTGG---CCTTGAGCTCCGCCCAGTCCCACAGGTCCGA 23714 Query 114088 CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTC 114147 | || ||||| ||||| || |||| | ||| || || || ||||| || | Sbjct 23713 CGGCGTGACCCCC---CACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCGGC 23657 Query 114148 AAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGT 114206 | |||||||| ||| | ||| |||| ||| | | |||| || || || |||| Sbjct 23656 GTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGCGT 23598 Query 114207 GATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 114266 | || || |||||||| || | | |||| | | |||||| | || |||||||| | Sbjct 23597 GGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACGC-A 23539 Query 114267 GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 114325 | || | || || ||||||| || || || ||||||| || || || || || Sbjct 23538 TACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGA 23479 Query 114326 CTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTT 114385 | ||| || ||||| || || ||| || ||||| | || | ||||| | | | || Sbjct 23478 CGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTC 23419 Query 114386 AGATTTTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAA-TCAAAACT 114438 || || ||| || |||| | | | | || |||| ||||| || | Sbjct 23418 AGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACGTCT----T 23363 Query 114439 GCGAGTCTCT---TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGA 114495 | ||| || ||| ||| || | || || ||||| || || || || ||||| | Sbjct 23362 G---GTCACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGC 23309 Query 114496 GGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGT 114555 ||| || | | ||||||| || || || |||||||| || || | ||| || || Sbjct 23308 CACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGT 23249 Query 114556 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGT 114615 ||| | |||||| || || ||| ||| || |||||||| || ||| | || | Sbjct 23248 GCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTT 23189 Query 114616 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGG 114674 |||||||| || || |||| ||| || || | ||||| | || ||| | | || ||| Sbjct 23188 GCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTG-ACGGTGC 23130 Query 114675 CGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG 114734 || | || ||||| ||||||| ||||||| |||||||| ||||| | Sbjct 23129 GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGC 23070 Query 114735 CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAA 114794 || | || || || || | ||||| | ||| ||||| | || || ||| | Sbjct 23069 AGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGA 23010 Query 114795 CACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTT 114854 | | |||||||||||| || || | |||||| || ||||||| || || || | | Sbjct 23009 CCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCT 22950 Query 114855 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 114914 | || | || || || |||| || | || || | || |||| |||||| |||| Sbjct 22949 CCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTT 22890 Query 114915 CCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTG 114971 | | ||| | || | | || ||| ||| |||||| || || | ||| | Sbjct 22889 CAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAG 22830 Query 114972 TGGCATTAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCG 115029 || || || ||||| ||||| || | || || | | || || || || || Sbjct 22829 TGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA--CACCGTTGGTGCCGGC 22772 Query 115030 AA--TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCAC 115087 || |||||| | || | | || |||||||| | || || || || ||| | Sbjct 22771 AATGTACGAGCC--GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTC 22714 Query 115088 TTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTA 115147 || ||||| || || | |||| | ||||||| ||||||||||||||| |||| Sbjct 22713 TTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTC 22654 Query 115148 TTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTT 115207 | | | ||||||||| ||| | || || || ||||| ||||||||||| || Sbjct 22653 ATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTA 22594 Query 115208 GGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGG 115266 || | |||||| | || ||| ||| ||||| | ||| ||||| | | || Sbjct 22593 GGCGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTC 22535 Query 115267 AATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||||| | ||||| || |||| | ||| ||||| | ||||| ||||| Sbjct 22534 GATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGG 22484 >seq2408 Length=74372 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| |||||||||||||| |||||||| || || ||||| || || Sbjct 34283 GGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACC 34342 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| |||||||| | |||||| |||| ||||| |||||||| ||||| Sbjct 34343 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGAT 34402 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 126204 ||||| || || ||||| | |||||||| || || Sbjct 34403 GCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334895365400