Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1972 123 2e-23 seq1866 93.3 4e-14 >seq1972 Length=278426 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || | ||| || |||| |||||| ||||| ||||||||||| || | Sbjct 201995 ACCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGA 201936 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || ||||||| |||||||| || || | ||||| |||||||| || ||||| Sbjct 201935 GAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGG 201876 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||| || || | || || || || || Sbjct 201875 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 201816 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | ||| | ||||||||| || | || || || ||||| ||||| Sbjct 201815 TTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 201768 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || ||||||||||| || | | ||||| | ||||| |||||| Sbjct 202198 TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGC 202139 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||||||| | || || |||||||| || |||||||| ||||| || ||||| || || Sbjct 202138 TTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTG 202079 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | || || | || ||||| | ||| | ||||||||| || Sbjct 202078 GCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTG 202019 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || || || || ||||| Sbjct 202018 AGCGTCTTGACAAAGATCTGCAT 201996 >seq1866 Length=288946 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | |||||||| || || |||||||| || | Sbjct 192233 ACCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGA 192292 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | || || |||||||| ||||| | || || |||||||||||||| || Sbjct 192293 GAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 192352 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| || || || || || || || Sbjct 192353 AATACCCTCCTTGTCCTGAATCTT 192376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499629154872200