Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 259 5e-64 seq2408 161 1e-34 seq2311 111 2e-19 seq1972 93.3 4e-14 seq611 82.4 8e-11 >seq3 Length=70329 Score = 259 bits (286), Expect = 5e-64 Identities = 1066/1636 (65%), Gaps = 55/1636 (3%) Strand=Plus/Minus Query 152850 CGGTCGGCCGCCATCTCAATCAT-GCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAA 152908 ||||| || ||||| || || || || || || || ||||||||| | || ||||||| Sbjct 24081 CGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTG-ATCTCCCAGACCGTCTTGTACAG 24023 Query 152909 ATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT 152968 || || | || || || || ||| | |||||| || || || ||| || | || Sbjct 24022 CTTCTTGATGCGGTCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGAT 23963 Query 152969 AGCGTTTCGTATTTCGGGCGTGT-ACACGTTCAGTTTAATGAGGTCATCGATCAAGTACT 153027 | || ||| | | | ||| ||| | | | | | || || | ||| || Sbjct 23962 A-CGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACAACCACG 23904 Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 |||| ||||| || ||||| ||||| | ||| || | | || | ||| || ||| Sbjct 23903 GGTTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAG 23844 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | |||||| ||| || || ||| ||| | ||||||||||| |||| Sbjct 23843 GCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCA 23784 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || || || || || | |||||| || | | |||| | | || ||| |||| Sbjct 23783 GCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCC 23724 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 |||| ||||||| || | ||||||||||||||| ||| | || | ||||| Sbjct 23723 ACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCG 23664 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGC-CTCGAGC 153326 |||||| |||| ||||||||||| | | ||||| ||||| | | | ||| || Sbjct 23663 AGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCA-CGATCGCTCCAGT 23605 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC-GCTTCTTCGCTCTC 153385 ||| | | ||| ||||| || ||| || || || || | || || | ||| Sbjct 23604 GCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT-CGCCGAGCCTCGGCCGACTC 23546 Query 153386 GTACGGCATGCGC-AGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 ||| ||| | | | | || || || || || || ||||| | ||||| ||||| | Sbjct 23545 AAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCG 23487 Query 153445 GTCGATGCTTCTCGTTG--CT---GCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATC 153499 | || || | |||| || ||||||| |||| | ||||||| || || Sbjct 23486 GACGGTGACGCATGTTGGACTTGCGCGCCTC---CTCG--ACCGGATAGTAGTTAATGTC 23432 Query 153500 GATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTATCGCCTTA-AGTTTCTCGAAA 153557 ||| || ||||| ||||| ||| ||| | | ||| | || || || Sbjct 23431 GATGATCTTGTTCAGGTTCTTGCAGATGGCCTT--GGCAACGCTGTGCAGACGCTTAAAG 23374 Query 153558 TCATAGGTCATTTCGTCGACGCGT--ACGCATCGATTCACGGCAATAGACGCCAGATTAC 153615 || || ||| || ||| | || | | | || || || || || || || | Sbjct 23373 TCGTACGTC--TTGGTCACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGC 23316 Query 153616 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATT 153675 | || ||| ||| |||| ||||||||| | |||||||| || | |||| ||| | Sbjct 23315 ACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACT 23256 Query 153676 TTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGT 153735 | || ||| | || | ||| ||||| ||||| ||| ||||| ||| | || ||| Sbjct 23255 TGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGA 23196 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGC-AGGTCCTGCGCTCGC 153794 | || ||| |||||| || | |||| ||| | || || | ||||||| Sbjct 23195 AAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTACCAGAGCTTCTGCGCTTTG 23137 Query 153795 ACCCGCTGCCGAT--AGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 || | ||| | |||| |||||| |||||| |||||||| || ||||||||||||| Sbjct 23136 AC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGT 23079 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | |||||||||||||| || || || |||| | || ||||| |||||||| ||| Sbjct 23078 CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGT 23019 Query 153913 -CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | || | ||| | |||||| ||||| ||||||||||| || || | ||| || ||| Sbjct 23018 TCTGC-TCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGC 22960 Query 153972 GCCTTGCAA-TCCTCCGCGCCCATGTT---GCGTTTCAGATTGAGCACGCTATAGATGTC 154027 || ||| |||||| || ||| ||| ||| | ||| | | ||| ||| Sbjct 22959 GCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTCGAGGAACTCAAAGACGTC 22904 Query 154028 GGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATC 154084 | |||||| ||||||||||| | || | |||||| |||||| || ||||| || Sbjct 22903 CGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTC 22844 Query 154085 GACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC-GGTGC 154143 ||||| |||| | | |||||||||||||| | |||||| | | |||| |||| | | Sbjct 22843 GACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCG-TTGCTGACAC 22785 Query 154144 CGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGC 154203 ||||||| || | |||| | | || | ||| | ||| | ||| |||| Sbjct 22784 CGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGATGC 22725 Query 154204 CGCC-GCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGAT 154261 | || ||||| ||| || || || | |||| || || ||||||||||||||| Sbjct 22724 CACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTGAGGGTATCGTAGATGCCGTCGAT 22667 Query 154262 GCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGC 154321 || || | | | | ||| ||||| | | ||||| |||| | | ||| Sbjct 22666 CGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGG-GTGCGGGGTACCGG 22608 Query 154322 CG-AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 || ||||| || || ||||| ||||| ||||| ||| | | |||||| | Sbjct 22607 CGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCT 22548 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 |||||||| ||||| || | |||||| ||||||| ||||| |||||||||||||||| Sbjct 22547 CGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCT 22488 Query 154441 GCGGACGTTCGGCGAC 154456 | ||||| || ||||| Sbjct 22487 GGGGACGCTCTGCGAC 22472 >seq2408 Length=74372 Score = 161 bits (178), Expect = 1e-34 Identities = 495/756 (65%), Gaps = 41/756 (5%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 ||||| | |||||| | |||||| ||| ||| | ||||||||||| || | ||| | Sbjct 34744 AACGACAATGAGCGCCACTTTATCTCGCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGT 34685 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAG--CGGAACGTTCCGGAACTCGAGGCGC 52203 ||||| ||| |||||| | ||| | ||| ||||| |||| || |||||| | Sbjct 34684 ATCGTCAACGAGAACCTCGTTGAGCGTTT-CAGTTCGGAA-GTTCAGGCCGCCGAGGCTC 34627 Query 52204 AATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGC 52263 | ||| || ||| || | | || ||| | | ||| |||||| ||| |||| Sbjct 34626 GTTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCGCTGC 34567 Query 52264 TCATTGAGCAGCTGATAAAAGATGAGCACGAGC---GCGACACGCTGCTGAATGCGTTCG 52320 |||| || || || | | | ||||| |||| | || ||| | | || ||| Sbjct 34566 TCATCGA-CA-CTTACATCCG-TGAGCCTGAGCAGCGTGAATATCTGTTTGACGCCGTCG 34510 Query 52321 AGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACA 52380 || | | ||| ||| | ||||| | ||||| | |||||| ||||||| Sbjct 34509 AGACCATCCCGGTCGTCAAGCAGAAGGCCGACTGGGCTCTTCGATGGATC---AGCGACA 34453 Query 52381 CC---GCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttttt 52437 ||||| | |||||||| |||| || || ||| ||||||||| | ||||| | Sbjct 34452 AGCGTGCCACTTTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCT 34393 Query 52438 CCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGT 52497 | ||| || ||| | ||||| | | || | | || | |||||||| || |||| Sbjct 34392 CGGGCTCATTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGT 34333 Query 52498 TCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT----- 52552 || ||||||| | || ||||| ||||| || || |||||||||||||| ||||| Sbjct 34332 TCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT 34273 Query 52553 ----CTACTACAAGACGCGCGTG-ACCGAAAAATTGGATTCGGACACGATCCTGAGCATG 52607 | || || || ||||| | ||| | |||||| | || | || Sbjct 34272 TCAGCCACCTCAGGAGGCGCGCGCACC-------------CAGACACGGTGCTCAAGATC 34226 Query 52608 TTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTG 52667 ||| ||||| |||| ||||| |||| ||| | | | | || |||| ||| Sbjct 34225 ATCACTGAGGCCGTGGAAATCGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCGCGCTC 34166 Query 52668 CTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 | || |||||| || ||||||| | ||||| |||| ||| || ||||| || || Sbjct 34165 ATCGGTATGAACAGCAAGCTCATGTGCCAATACATTGAGTATGTCGCCGATCGCTTGCTG 34106 Query 52728 GTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCA-ATCCGTTTGAGTTTATGAACAA 52786 || |||||| | ||| | ||| | | | | || ||||||||| ||||||| ||| Sbjct 34105 GTATCGCTCGGAAACCCAGTGCACTACGGCTC-CACATGTCCGTTTGACTTTATGACCAA 34047 Query 52787 CATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAA 52822 ||||||| | || |||||||||||||| || ||||| Sbjct 34046 CATTTCGTTGGAAGGCAAGACCAACTTCTTTGAGAA 34011 >seq2311 Length=83875 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || ||||||||||| Sbjct 80539 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80480 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || ||||| | |||| |||||||| ||||| || || Sbjct 80479 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80420 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||| | |||||||| Sbjct 80419 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT-CGATGGTGTCCGAAGACTCCAC 80361 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || ||||| || || || || ||||| |||||||| Sbjct 80360 CTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80313 >seq1972 Length=278426 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || ||||||||||||||| | || || ||| ||||| || ||||| | Sbjct 201961 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 201902 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 201901 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 201842 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 201841 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTA 201782 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 201781 ACAAAAATCTGCAT 201768 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || ||| || || ||||| || || |||| | Sbjct 202189 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 202130 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| || || ||||| || ||||| ||||| ||| || || | Sbjct 202129 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACG 202070 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| || |||| || | || || || || || || || Sbjct 202069 TTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTG 202010 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 202009 ACAAAGATCTGCAT 201996 >seq611 Length=45555 Score = 82.4 bits (90), Expect = 8e-11 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 138487 AGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTC 138545 |||||||| ||||| || || ||||| || ||||| ||| || || | ||||| | Sbjct 45553 AGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT-C 45495 Query 138546 CACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAA 138605 | ||||||| ||||||||||| | || | ||| || || |||||||| || ||||| Sbjct 45494 GATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTTGACAAA 45435 Query 138606 AATCTGCATGGCTTATAAT 138624 || |||||||| | |||| Sbjct 45434 GATTTGCATGGCCTGTAAT 45416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246860783600