Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 143 4e-29 seq2408 125 1e-23 >seq3 Length=70329 Score = 143 bits (158), Expect = 4e-29 Identities = 513/774 (66%), Gaps = 36/774 (5%) Strand=Plus/Minus Query 203848 CGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAG 203907 ||| || || || |||||| || ||| || ||| |||||||||| | || ||||| || Sbjct 24241 CGTAAATTGGATCGCGTTCGACGCCGGCTTGGTTCGCAGATAGTACGTACCCGTCTTGAG 24182 Query 203908 GCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTT-TGCTCACGTTGGGGTCGGCCA 203966 ||||| | ||| ||||| | |||||| || | || | | | |||| || | || | Sbjct 24181 TCCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGTGCCGAA-A 24123 Query 203967 TGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTG 204025 ||||||||| || ||||| ||| ||| ||| || || || || || ||||| | | Sbjct 24122 GGTGAATGTTGAGCGACTGCGACTGGCAGAT-AAACGCTCCTCGGTCCGCAGCCATGTCG 24064 Query 204026 ATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTTGAGG 204084 || || | |||||| |||||||| ||||||||| ||| | ||| || || | | ||| Sbjct 24063 ATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCT-TGATGCGGTCAGG 24005 Query 204085 CACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCT 204140 | || | |||| ||| ||||| ||| || || || | | || || |||| | Sbjct 24004 AATGCCTGGC-ACGTTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGT 23946 Query 204141 CCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAA 204200 | | || ||| |||| | | |||||| |||| || ||||| | | ||| | Sbjct 23945 CGTTCC---ACAGGCCCTGCTCCACCAGCTCGCGCAACAACCACGGGTTCACCACCTGGA 23889 Query 204201 AGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGT 204260 | || || | ||||| | || | | | | |||| || | || ||||| ||||| Sbjct 23888 ACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGT 23829 Query 204261 TGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGC 204320 | ||| | |||||| || || || ||||| || ||||| ||||| ||||||| Sbjct 23828 TAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGC 23769 Query 204321 GCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCACTGGG 204378 | | |||| || || | || ||| || | |||||| || || || | | Sbjct 23768 GAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCG 23709 Query 204379 TTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC-TGCCCTTGTACG 204437 | || |||||||||||| |||| || || || | | |||| ||| ||||| Sbjct 23708 TG--ACCCCCCACATGTCGTACTGCAACTCACCCTG-CGAAGCGGGCGAGCCGGCGTACG 23652 Query 204438 TCGGATAAGGCTG--ATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTA 204495 || || |||| | || || ||||||| |||||| ||| ||| | ||| Sbjct 23651 TCTCGTA--GCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGCTCCAGTGCGGCGTGGTA 23594 Query 204496 CATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCG--TCAAACGCCAG 204552 ||||||||||||||||| ||||| | || | || ||||| | ||| ||||||| || Sbjct 23593 GATGGTCTCAAAGATCTGCACGTTCAGTC-GCCGAGCCTCGG--CCGACTCAAACG-CAT 23538 Query 204553 ACCCAGCATG-GCA--AACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 |||| |||| || ||| | ||||| | |||||| || ||||| || | ||| Sbjct 23537 ACCC--CATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGG 23486 >seq2408 Length=74372 Score = 125 bits (138), Expect = 1e-23 Identities = 292/436 (67%), Gaps = 7/436 (2%) Strand=Plus/Plus Query 159733 TCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACA 159792 |||||| | ||||||| | || || ||| | || ||||| ||||| ||| | Sbjct 34094 TCCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCT 34153 Query 159793 GTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGAC 159852 ||| || || | ||| ||||||| | ||| |||| ||| ||||||| || || || Sbjct 34154 GTTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCGATTTCCAC 34213 Query 159853 CGCTTCGGTCACAATCTGCGAGACACGTTCGTACCCCGG--CTTGCCCAAAATGTGGTCC 159910 || || || | |||| ||| ||| ||| | || | || | || ||| Sbjct 34214 GGCCTCAGTGATGATCTT-GAG-CAC---CGTGTCTGGGTGCGCGCGCCTCCTGAGGTGG 34268 Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 | || || ||||| |||||||| ||| || |||||||| || ||||||| ||||||| Sbjct 34269 CTGAAGAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTG 34328 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 || | |||| || ||||||| || ||| |||||||| || || | || || | Sbjct 34329 GAGAACGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAG 34388 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || |||||||| ||||| ||||| |||||||| || || | ||| | |||| ||| Sbjct 34389 CCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCA 34448 Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGC 160150 |||| | |||| | ||||| || ||||||| || | ||| ||| | Sbjct 34449 CGCTTGTCGCTGATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTC 34508 Query 160151 TCGACGGCGTTAAACA 160166 |||||||||| ||||| Sbjct 34509 TCGACGGCGTCAAACA 34524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795130301702800