Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2311 145 9e-30 seq1972 116 4e-21 seq1866 100 3e-16 >seq2311 Length=83875 Score = 145 bits (160), Expect = 9e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| ||| |||||| ||||| |||||||| || || || || | Sbjct 80528 ACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCC 80469 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| || ||||| |||| ||||||||||||| ||| | || |||||| Sbjct 80468 GTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTT 80409 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | ||||| || ||||| || | ||||| Sbjct 80408 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGAT 80349 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || ||||| || || || |||||||| ||||| ||| Sbjct 80348 GGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTTG 80309 >seq1972 Length=278426 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||| || || | || ||| || || || ||||||||||| || || || || Sbjct 201982 CGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG 201923 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| || ||||| || | |||||||| || | || | || |||||| Sbjct 201922 TCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTG 201863 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | ||||| || || || || | || || Sbjct 201862 TCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAAT 201804 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| ||||| |||||||| || ||||| Sbjct 201803 GGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 201768 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| || |||||||| | || ||||||||||||||||| || Sbjct 202186 TCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAG 202127 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | || |||||||| |||||| ||||| ||| Sbjct 202126 ATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 202068 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || || | |||||||| ||||| || ||||| || || Sbjct 202067 GTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGAC 202008 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 202007 AAAGATCTGCAT 201996 >seq1866 Length=288946 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || ||||| | || ||||||||||| |||||||| Sbjct 192270 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAG 192329 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||||||||| || | | |||||||||| ||||| ||||| Sbjct 192330 ATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGA 192384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565220700972600