Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 289 4e-73 seq2408 123 3e-23 seq1 84.2 3e-11 >seq3 Length=70329 Score = 289 bits (320), Expect = 4e-73 Identities = 915/1395 (66%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||| ||||| || | || || || | Sbjct 22484 CCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCC 22543 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || | |||||| | || || ||||| Sbjct 22544 ATCGAGACGTACAACCTTATGTCGCAAAAGTACTTT-ACCCACGCCTCGCCTACGCTCTT 22602 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || || || | || || |||||| || | | ||||| || Sbjct 22603 CAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGA 22662 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| |||| || |||| |||||| ||||| ||| ||| || Sbjct 22663 CTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGG 22722 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 ||| ||||| | |||||||| || | | || | | |||||| || || || Sbjct 22723 TGGCATCGGCCTCAACATCCATTGCATCCGTGGCACC--GGCTCGTACATTGCCGGCACC 22780 Query 111909 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 || ||| |||| | || ||| | || ||||| ||||| || ||| ||| ||||||| Sbjct 22781 AACGGTG--TCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCT 22838 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 | || |||| | ||| ||||| | || | | || | || |||| |||| Sbjct 22839 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCTATTTACATTGAACCAT 22895 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||| |||| || | |||||||| || |||| ||||| || | ||||||| || Sbjct 22896 GGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGC 22955 Query 112081 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | ||| || || ||||||| || |||||| | || ||||||||||||||||| || ||| Sbjct 22956 G-TGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAG 23014 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| ||| | ||||| ||| | || || || || || ||||| |||| | Sbjct 23015 CAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTAC 23074 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-AC 112258 ||||| |||||||| ||||||| ||||||| || |||| ||| ||| || Sbjct 23075 GGTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCGA-AGCGCAC 23133 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || ||| || || | | ||| | || || ||| |||| || |||||||| || | | Sbjct 23134 CGTCAAAGC-GCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACC 23192 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | || || ||||| |||||| |||| ||||| || || ||||| | || || Sbjct 23193 CTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGA 23252 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| | |||||| | ||||| || ||| | || | | | || ||| ||| | Sbjct 23253 TCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAG 23312 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 |||| |||||||| || ||||| || |||| || | || |||| ||| ||||| | | Sbjct 23313 TGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCATTGACCCAGTGACCAAGACGTACG 23372 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | || ||| ||| | || | || || ||||| |||| | || | Sbjct 23373 ACTTTAAGCGTCTGCACAGCGTTGCCAAGGCCATCTGCAAGAACCTGAACAAGATCATCG 23432 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || | || || || ||| || || || || || ||| | |||||||| || | Sbjct 23433 ACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAACATGCGTCACCGTCCGATCG 23492 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 112675 | ||||||| || || || ||||||| ||||| || | | | | || ||||| || Sbjct 23493 GGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCATGG--GGTATGCGTTTGAGTC 23550 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 | ||| || | | | || | || || |||||||| || || |||||||| || || Sbjct 23551 GGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGAGACCATCTACCACGCCGCACTGGA 23610 Query 112736 GGCGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 |||| || | ||| |||| ||| | || || || || | | || || || Sbjct 23611 -GCGATCGTGC-GAGCTGGCTGAGCAGCACGGCAGCTACGAGACGTACGCCGGCTCGCCC 23668 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGA 112852 ||||| || || | | | || | || ||||||| ||| | | | | | | || Sbjct 23669 GCTTCGCAGGGTGAGTTGCAGTACGACATGTGGG-GGGTCACGCCGTCGGACCTGTGGGA 23727 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 ||||| | ||||||| ||| || | || ||||| ||| || || |||| Sbjct 23728 CTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTTCGCAACTCGCTGCTGCTGGC 23787 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 ||| ||||| || || || || || ||| |||| ||| || ||||| || || || Sbjct 23788 ACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTTAACGAGTGCTTCGAGCCTTA 23847 Query 112973 CACGACGAACATCTA 112987 ||| | |||||||| Sbjct 23848 TACGTCCAACATCTA 23862 >seq2408 Length=74372 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||||| || |||| ||||| || ||||| ||||| ||||| || || ||| Sbjct 34441 TTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTC 34382 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 | | || | |||||||||||||| ||||||||||| |||||| |||||||||||| Sbjct 34381 GCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAG 34322 Query 102294 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||||| ||||||||||| || ||| || ||||| Sbjct 34321 CTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGC 34284 >seq1 Length=306704 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/240 (69%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGC 16111 ||| || | |||||| ||||| || ||||||| |||||| || || || | | || Sbjct 79114 CTTGCCGATGGCATCGATCTCGTCGATGAAGATGATGCAGGGCGCGTGCTTCTTG---GC 79170 Query 16112 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171 | |||| | || || || || ||| || ||||||||||||||||| ||||| | Sbjct 79171 GTTAGCAAACATGTCTCGCACTCGGCTGGGACCGACACCAACAAACATCTCGACAAACTC 79230 Query 16172 TGCGGCGGA-ACATTGGAT--GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 16228 | | || || ||| ||| || ||| || ||||| ||| | || ||| || Sbjct 79231 GGAACCCGAGAC---GGACAGGAAAGGCACACCAGCCTCACCAGCAGTCGCCTTGGCCAG 79287 Query 16229 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || |||||||| ||||| || ||||| ||| | ||||| || || ||||||||||| Sbjct 79288 CAGCGTCTTACCGGTACCGGGAGGACCCGAGAGAATAGCACCACGCGGGATCTTGGCGCC 79347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722963003600