Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 223 4e-53 seq2408 102 1e-16 >seq3 Length=70329 Score = 223 bits (246), Expect = 4e-53 Identities = 897/1394 (64%), Gaps = 33/1394 (2%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||| || || || ||||| || ||| |||| ||| || || || Sbjct 23862 TAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAA 23803 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| ||||||| || || ||| ||||| || | | ||| || Sbjct 23802 GCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCC 23743 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATATCAAATTGAAG 106113 ||||| | ||||||| | | | || | ||| ||||||| || | || | Sbjct 23742 TTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCC-CCCACATGTCGTACTGCAA 23684 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAA 106173 | | || || || | ||| || || | | ||||| ||| || || ||||||| Sbjct 23683 CTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAG 23624 Query 106174 TTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-TC 106231 || || | |||| ||||| | ||||| || ||||| |||||||| | | |||| || Sbjct 23623 CTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTC 23565 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 || | || | | || ||||| || || | | || || ||||||| || || Sbjct 23564 GCCGAGCCT-CGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCC 23506 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 106351 |||||||| | || || || | ||| ||||| || ||||| ||||| ||| || ||| Sbjct 23505 TGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGA 23446 Query 106352 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 106411 || | || |||| |||| ||| || || ||| | ||| | | || Sbjct 23445 TAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTGC 23386 Query 106412 AGTTTTTCATAATCAAAAGTGCGAGTCTCT---TCATTGACATACTTTGGAAGGGCGATT 106468 || | | | || | || ||| || ||| ||| || | || || ||||| Sbjct 23385 AGACGCTTAAAGTCGTACGTCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGATC 23329 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 || || | ||||| || ||| ||| || | | ||||||| | || || |||||| Sbjct 23328 GAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACAC 23269 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 |||||||| | ||| ||||| || | ||||| ||||| ||||| |||| || ||| Sbjct 23268 AAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCC 23209 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-C 106647 ||||| || ||| | || | |||||||| |||||||||| ||| || || | ||| | | Sbjct 23208 TTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGC 23149 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || || ||| || || || | || ||||| |||||||| ||||||| Sbjct 23148 TTCTGC-GCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCG 23090 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 |||||||| ||||| ||||| ||||| || || || || || | || || Sbjct 23089 CTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGA 23030 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| | || || ||| |||| ||||||||| || || || | ||| || | | || Sbjct 23029 CCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAA 22970 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 106887 ||| || | || |||| || | || ||||| || | || |||||||| | Sbjct 22969 GAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAA 22910 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CC 106941 || |||| ||||||||| |||| || | || | | || ||||| || Sbjct 22909 GACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACC---GGGACGCTTGTTGCC 22853 Query 106942 AGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT- 107000 | | || | || |||||||| ||| ||| || ||||| ||||| || | ||| || | Sbjct 22852 ACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT 22793 Query 107001 -CTGATTGACCATTTGTCCCCCGAA--TACGAGATTTATTGGCTCTCACATCATGGATGT 107057 |||| ||| || || || || |||||| || | | | |||||||| Sbjct 22792 GCTGA--CACCGTTGGTGCCGGCAATGTACGAG--CCGGTGCCACGGATGCAATGGATGT 22737 Query 107058 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 107117 | || || || || ||| ||| ||||| ||||| | | || || | |||| Sbjct 22736 TGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGA 22677 Query 107118 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177 | |||| ||| ||||| ||||| ||| | ||||||||| || | |||||| | Sbjct 22676 TGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCG 22617 Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTG 107236 | ||||| || |||||||| || || | ||||| | || ||| ||| ||||| | Sbjct 22616 GGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGG 22558 Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296 | ||| ||||| | | | || ||||| | ||||||||||||| || || ||||| Sbjct 22557 TTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATG 22498 Query 107297 AACATGTATTGGGG 107310 | ||||| ||||| Sbjct 22497 AGCATGTGCTGGGG 22484 >seq2408 Length=74372 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| ||| ||| |||||||| || || || || || || || ||||| || || Sbjct 34283 GGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACC 34342 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | |||||| || ||||| ||||| Sbjct 34343 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGAT 34402 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 ||||| || |||||||| | || ||||||||||| Sbjct 34403 GCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962326226200