Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 331 2e-85 seq2408 232 1e-55 >seq3 Length=70329 Score = 331 bits (366), Expect = 2e-85 Identities = 1243/1916 (65%), Gaps = 100/1916 (5%) Strand=Plus/Minus Query 212582 CTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCAT 212641 |||||| || ||||||||| | || ||||| || ||||| |||||||| | |||||| Sbjct 24214 CTTGGTTCGCAGATAGTACGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGTGCAT 24155 Query 212642 TGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGT--AGGTTC 212699 | ||||| | | || | | ||| ||| | | || | ||| Sbjct 24154 CGAGGTGAGCTG-TCCA----------------AACGTCGGTGCCGAAAGGTGAATGTTG 24112 Query 212700 AGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTC 212759 || ||||| |||| || || | | | ||| || |||||||| ||||| | || Sbjct 24111 AGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGTCGATGATCGCCTTC 24052 Query 212760 TGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATG 212819 ||| || |||||| || |||||| | | | |||| | || || | ||| || | | Sbjct 24051 TGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCAGGAATGCCTGGCACG 23992 Query 212820 TTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGG 212876 ||||| | || || | ||| ||| | | | | | |||| |||||| ||| Sbjct 23991 TTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGTC---GTTCCACAGG 23935 Query 212877 CCCCTGGTCTCCAGGCACTTG-ACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAG 212935 ||| || || | || | | | || ||||| || | |||||| ||||| | ||| Sbjct 23934 CCC-TGCTCCACCAGCTCGCGCAACAACCACGGGTTCACCACCTGGAACTCACCCGCGAG 23876 Query 212936 CACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAAT 212995 ||| | || ||| | ||| || || || ||||||| || |||||| ||||| || Sbjct 23875 CACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGAT 23816 Query 212996 CTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC 213055 ||| || || || ||||| || |||| ||| || ||| | | ||||||| Sbjct 23815 CTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTT 23756 Query 213056 GCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCAC 213115 | |||| | | ||||| ||||||||||| ||||||| | | || Sbjct 23755 GGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCA---------CAGGTCCGACGGCGTGAC 23705 Query 213116 GTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTG-GTAAGAGGAGT 213174 ||||||||| ||||||| || | || | |||| || | ||| | || Sbjct 23704 CCCCCACATGTCGTACTGCAACTCACCCT-GCGAAGCGGGCGAGCCGGCGTACGTCTCGT 23646 Query 213175 AGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTT 213234 || ||| |||| || ||||||||||| || || ||| || |||| ||||||||| | Sbjct 23645 AGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGCTCCAGTGCGGCGTGGTAGATGGTCT 23586 Query 213235 CAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCAT-CATCATGCGT 213293 |||| |||| | ||| || | ||||| | ||| | || |||| | |||| Sbjct 23585 CAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGAC-TCAAACGCATACCCCATGATC 23527 Query 213294 TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGAC 213353 |||| |||| || || ||||| || ||||| ||||| || | ||| | || ||| ||| Sbjct 23526 ATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGAC 23467 Query 213354 TTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTT---GCG 213409 ||| | || |||||| | || || |||| ||||||||||||||| ||||| || Sbjct 23466 TTGCGCGC-CTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCA 23408 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTA-GCCCCCGTC-C 213467 | ||||| |||| || | ||| || | || || |||| | | ||| | Sbjct 23407 GATGGCC---TTGGCAACGCTGTGCAG--ACGC----TTAAAGTCGTACGTCTTGGTCAC 23357 Query 213468 TGCA-CAA---ACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAG 213522 || ||| || ||||| ||||| ||| |||||||| || |||||||| | | | Sbjct 23356 TGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGG 23297 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 || | ||||||| ||||||||||| |||| |||| ||| ||| ||||| ||||||| Sbjct 23296 AG-CGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCT 23238 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 ||||| ||| |||||| | |||||||| || ||| | ||| || ||||| Sbjct 23237 TCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGG 23178 Query 213643 GCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTC 213702 ||| ||| | || || | |||||| | | || ||||| ||| | ||| Sbjct 23177 TCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCG-AGCGA 23119 Query 213703 CGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCA 213762 | || |||||||| | |||||||| | || |||| || || | ||| Sbjct 23118 CCCTCG--GCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCA 23061 Query 213763 GTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTCTCTGC 213821 | || || || ||| |||||||| |||||| |||| | ||| ||| |||| | Sbjct 23060 GACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTC-GACCCTCTTC 23002 Query 213822 ATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACT 213881 ||||| || || || ||||| || || ||| || || | | | | ||| ||| | Sbjct 23001 ATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTT 22942 Query 213882 CCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAG 213941 || ||| |||||||| || || || ||||||| ||||| |||||| || || ||||| Sbjct 22941 CCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAA 22882 Query 213942 ATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTG 213998 || |||||||| || || | |||| || |||||||| || | || ||||| Sbjct 22881 ATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTG 22822 Query 213999 AAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTC--CGTTGGTTCCCGCTATATACG 214056 |||| ||| || | ||| || | |||||| ||| | ||||||| || || || |||| Sbjct 22821 AAGACGCGGAGCATGGGCACAATGCCGTTG--CTGACACCGTTGGTGCCGGCAATGTACG 22764 Query 214057 AGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAG 214112 |||||| | | | || ||| ||||| ||| || ||||||||||| ||||||| Sbjct 22763 AGCCGGTGCCAC---GGATGCA-ATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAG 22708 Query 214113 ATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTC 214172 |||||||| || | | | || || ||||||| | || |||||| | | | | Sbjct 22707 ATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTA 22648 Query 214173 AGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTG 214232 | | |||||| ||||||||| || | | || | |||||| ||||| || | Sbjct 22647 ACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAG 22588 Query 214233 GCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCG 214292 || ||| | | |||| | || | || |||| ||||| | | | |||||| Sbjct 22587 GCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCC 22528 Query 214293 TGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCT 214352 || |||||| | |||| | ||| |||||||||||||| | ||| || | ||| Sbjct 22527 TGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTC--TGCGACCT 22470 Query 214353 TTGGGGCCCTT------GAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCC---AAAGTAG 214403 | ||| || ||||| ||||| ||||| || |||||||| || ||||| | Sbjct 22469 T----GCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTG 22414 Query 214404 GAGTAGGTATGATCGTTCCCGTGTATGAGGGCAGCGTCCAGCTCTTCCGCGTGCTC 214459 ||| || | |||| ||| |||| ||| | ||| |||| ||| |||||| Sbjct 22413 TAGT-GGAAGTCACGTT--CGTAGATGATGGCCGAGTCGAGCTGGTCCTTGTGCTC 22361 >seq2408 Length=74372 Score = 232 bits (256), Expect = 1e-55 Identities = 554/828 (67%), Gaps = 20/828 (2%) Strand=Plus/Plus Query 47858 TTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGT-- 47915 |||||||||||||| ||||| || |||||||| ||||| ||| ||| || || Sbjct 34011 TTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACAT 34070 Query 47916 -TGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTAC 47974 ||| || | ||| | | || | | | |||||| | |||| ||||| ||| Sbjct 34071 GTGGAGCCGTAGTGCACTGGGTTT---CCGAGCGATACCAGCAAGCGATCGGCGACATAC 34127 Query 47975 TCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCTTT 48034 || ||||||| ||||||| || ||||||| || ||||| | ||||| | | | Sbjct 34128 TCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACGGGGATTGATTCG 34187 Query 48035 GTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCT 48094 || ||| ||||||| || | |||||| || | |||| || || | || Sbjct 34188 CACAGGAACGCCTTCTCGATTTCCACGGCCTCAGTGATGATCTTGAGCAC-CGTGTCTGG 34246 Query 48095 GAGGGTTTGT-TGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCC 48153 | | | | | | ||||| || |||| | ||||||||||||| |||| | || Sbjct 34247 GTGCGCGCGCCTCCTGAGGTGGCTGA---AGAGAAGGCAGGCAAAGTCCGTGTGAAGACC 34303 Query 48154 TTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTT 48213 ||||| || ||||||| |||||||||| |||||| ||||||| || | || || Sbjct 34304 CTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTTCTT 34363 Query 48214 GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||||||| || | ||||| ||||| ||||| ||||||||||| || || || ||||| Sbjct 34364 GAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAACGC 34423 Query 48274 GGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGC 48333 | || | ||| |||||| || |||||| |||||| ||| |||||||| || Sbjct 34424 GACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGCCCAGTCGGC 34483 Query 48334 CTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACT-CACCTG 48392 ||||| ||||| | || || ||||| | ||| || || | | | || | | | Sbjct 34484 CTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTGCTCAGG 34543 Query 48393 CGTCCGCAACATAG-GTAG-TGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTAT 48450 | || | || || | |||||||| | ||| |||| ||||| | ||||| || Sbjct 34544 CTCACGGATGTAAGTGTCGATGAGCAGC---GAGTAGGTCTCCGAGTGGATGTTCTCCAT 34600 Query 48451 AGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCT 48510 ||||||||| ||||||||| | ||||| |||| ||||| | ||| | Sbjct 34601 CATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACTGAAACG 34660 Query 48511 CTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTT 48570 ||| | || ||||| ||||| || ||||| || ||||| ||||| ||||| ||||| Sbjct 34661 CTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCACATGCGA 34720 Query 48571 AAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCTGTACGTCTTTGCCCAG 48627 | || |||||||| |||| | | || || |||| | || | ||| ||| || Sbjct 34721 GATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAG 34780 Query 48628 GTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 ||| | || || | ||||||||||| || || || |||||||| Sbjct 34781 GTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 34828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931503631379200