Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 214 2e-49 seq2408 145 9e-29 seq2061 125 9e-23 seq555 107 2e-17 seq2256 86.0 8e-11 >seq3 Length=70329 Score = 214 bits (236), Expect = 2e-49 Identities = 282/393 (72%), Gaps = 15/393 (4%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||||||||| |||| ||| |||||||||||||||||||| | ||||||| Sbjct 22849 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCT 22790 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | ||||||||||| || | ||| | ||||| | | || | || | | ||| Sbjct 22789 GACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCC 22730 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| ||||||| ||||||||| | || || ||||| || ||||||||||| || Sbjct 22729 GATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTC 22670 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||||||||| |||||||| || || |||||||||||| |||||||||| || || Sbjct 22669 GATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACC 22610 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||||||| |||| || ||| || ||| ||||||| || ||| || Sbjct 22609 GGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGT 22550 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| ||| | | | |||| | || | | ||||| ||||| Sbjct 22549 CTCGATGGCGCTCTCGA------TGTCCTGG---------CCGTGGATGCCGACAGCGAC 22505 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGAC 1630457 ||||||||||||| |||||| ||||| |||| Sbjct 22504 TCGCATGAGCATGTGCTGGGGACGCTCTGCGAC 22472 Score = 116 bits (128), Expect = 5e-20 Identities = 289/444 (65%), Gaps = 10/444 (2%) Strand=Plus/Minus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGG 1628221 ||| || ||||||||| |||| ||||| || | |||| || ||||||| ||||||| Sbjct 23288 ACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGC 23229 Query 1628222 TGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCG 1628281 | | ||||| |||||||||||| || ||| | || ||| |||||| |||| | | Sbjct 23228 TCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACT 23169 Query 1628282 CGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCG---CGCGCGGCCCTNNN 1628338 ||| |||||| |||||| || |||| ||| || || || ||| |||| Sbjct 23168 CGAGGATGGCGTACCAGAGCTTCTGCGC---TTTGACGGTGCGCTTCGAGCGACCCTCGG 23112 Query 1628339 NNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCG 1628398 ||||| | | |||||||| ||| ||| || || Sbjct 23111 CCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGC 23052 Query 1628399 CCTCGGACGGACAAAAGAGCGACCAGTCGCC--ACCGGTCACCGCGCGGCGCATAAAGAG 1628456 |||| || || | ||||||||||||||| | | || | | | ||| ||||| Sbjct 23051 ACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTC--TTCATGAAGAG 22994 Query 1628457 GTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 1628516 ||| | ||| ||||| || ||||| || ||||| || ||||||||| |||||||| Sbjct 22993 ATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTT 22934 Query 1628517 CTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 1628576 ||| |||||||| | || | | ||| | |||||| || || | ||| ||||| Sbjct 22933 CTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAA 22874 Query 1628577 GGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| || |||||| ||| || Sbjct 22873 GGCACCGGGACGCTTGTTGCCACC 22850 >seq2408 Length=74372 Score = 145 bits (160), Expect = 9e-29 Identities = 204/286 (71%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| || ||| | |||||| || | ||| ||||||||||| |||||||| Sbjct 34301 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTT 34360 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | ||| ||||||||||||||||||||||||||||||||| Sbjct 34361 CTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 34420 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 ||| || |||||||| || ||| | | || | | ||||||| | ||||| Sbjct 34421 CGCGACCAGACGCTCGGCGAAAGTGGC---ACGCTTGTCGCTGATCCATCGAAGAGCCCA 34477 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTC 869418 ||||||||| | | | || ||| | || |||| |||| ||| || | || | Sbjct 34478 GTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTG 34537 Query 869419 GGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || || || || |||||||| || ||||| ||||||||| Sbjct 34538 CTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCC 34583 Score = 113 bits (124), Expect = 6e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 868798 TCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGC 868857 ||||||||| | |||| ||| ||||||||| |||| ||||| ||||||||||| | Sbjct 34094 TCCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCT 34153 Query 868858 GTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGAC 868917 |||||| ||||||||||| || || | || |||| || ||| | |||||||| || || Sbjct 34154 GTTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCGATTTCCAC 34213 Query 868918 GGCCTCGACGATGATCT 868934 |||||| |||||||| Sbjct 34214 GGCCTCAGTGATGATCT 34230 Score = 113 bits (124), Expect = 6e-19 Identities = 177/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||| ||||| ||| | |||| || | | Sbjct 34582 CCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCT 34641 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || ||| |||| || | | ||||||||| ||||| || || || |||| Sbjct 34642 GAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGA 34701 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGT 869807 | || || || || ||| ||||||||||||||| | |||| | ||| |||||| Sbjct 34702 AGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGT 34761 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | | ||| | ||||| | |||||| |||||||||| || ||||||||||| | Sbjct 34762 CGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCT 34821 Query 869868 TGTACATCTCCCA 869880 ||||||| | ||| Sbjct 34822 TGTACATTTGCCA 34834 >seq2061 Length=102739 Score = 125 bits (138), Expect = 9e-23 Identities = 116/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGC 19112 ||||| ||||| ||||| |||||| ||| |||||| |||| || || |||||||| Sbjct 97515 ATCGGTGGCACAGTGACATGCGTGATCCGCGGTGTGCCGTCAGGGCTGGGAGAGCCGTGT 97574 Query 19113 TTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGA 19172 || |||||| |||||||| ||| || ||||||||||| |||||||| |||||||| Sbjct 97575 TTCGACAAGCTCGAGGCCAAGCTGGCGCACGCCATGCTCAGCATCCCGGCAACCAAGGGG 97634 Query 19173 TTCGAGATTGGCAGCGGGTTTGCGGG 19198 |||||||| ||| ||||||| |||| Sbjct 97635 TTCGAGATCGGC-TCGGGTTTCCGGG 97659 Score = 109 bits (120), Expect = 7e-18 Identities = 264/396 (67%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 18082 TTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGC 18141 ||| | |||||||| | |||||||||||| | || || || || ||| |||| ||| Sbjct 96705 TTTCGCGTCACCACGTACGGCGAGTCGCACTGCGCCTCGGTAGGTTGTATCGTCGATGGC 96764 Query 18142 GTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGA 18201 ||||| ||| ||||| |||| || | | |||||| ||| | ||| | || || || Sbjct 96765 GTGCCTCCGGGCATGGCACTCGCTGCGCACGACATTCAGACGCAGCTCTCACGTCGTCGG 96824 Query 18202 CCGGGCCAGGGCGCACTT-TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTC 18260 |||||||| | || | || | ||||||||| | || || || ||| ||||| || Sbjct 96825 CCGGGCCA-GTCGAATTTGACGACGCCGCGCGATGAAAAGGACCGTGTCGAGATCCAATC 96883 Query 18261 GGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGA 18320 ||| || |||| | ||||| ||| |||| ||| | | | || ||||| || Sbjct 96884 GGGTGTCGAACGCGGCGTGACGCTGGGCACGCCGATCGCCATGCTGGTACGCAACCAGGA 96943 Query 18321 CCAGCGGCCCGTCGACTATTCCGAC-ATGTGC-----AAGGTGCCGCGGCCCTCACACGC 18374 ||||| || |||||| | ||| || || | | || || || || ||||| Sbjct 96944 TCAGCGTCCACACGACTACACGGACGATACGCTGGATACGTATCCACGCCCTTCGCACGC 97003 Query 18375 CGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTC 18434 ||||| || || ||| |||||| | ||||||| |||||||| || || || Sbjct 97004 CGACTTTACGTATCTGGAAAAGTACAACGTCAAGGCAAGCTCGGGCGGTGGAAGGAGCTC 97063 Query 18435 TGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 || || |||||| | || ||||| || ||||| Sbjct 97064 GGCTCGTGAGACCATTGGACGAGTCGCTGCGGGCGC 97099 >seq555 Length=207461 Score = 107 bits (118), Expect = 2e-17 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 507703 CACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGA 507762 |||| | || ||||||| |||||| |||||||||||||||||||||| ||||| Sbjct 195185 CACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGACTTTGACGGTGACGA 195244 Query 507763 GATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACCATGAG 507822 ||||||| |||||||||| ||| || | | || |||||| | |||| | | | Sbjct 195245 GATGAACTTGCACGTGCCACAGAGTGAAGAGACCCGTGCCGAGCTCTCGCAGATCGCCTG 195304 Query 507823 CGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGCCTGGTCATGGA 507882 || ||| | ||| || ||||| ||||||||||||||| |||| ||| | || ||| Sbjct 195305 GGTCCCGCGCCAGATTGTCTCGCCTCAGGCCAACAAGCCCGTCATGGGCATTGTGCAGGA 195364 Query 507883 CGCCCTC 507889 | | ||| Sbjct 195365 CACGCTC 195371 >seq2256 Length=90204 Score = 86.0 bits (94), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 12/221 (5%) Strand=Plus/Plus Query 1573932 TGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCG 1573991 ||||| || |||| || |||||| || | | |||| ||||||||||||||||| Sbjct 19569 TGTCTTGCTCGTGCGCTGCTGGGCGAAGCATACAAAGAGGGTGTGCTCGAACTCAACGCT 19628 Query 1573992 TCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCC----AA 1574047 || ||||| || || ||||| || || || || | |||||| ||| | | || Sbjct 19629 TCCGACGAACGAGGTGTCGATGTGGTTCGAAACAAGATCAAG----ACGTTTGCGCAAAA 19684 Query 1574048 G--AGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105 | || ||| || || |||||| | || ||| | ||||||||||||||||| || | Sbjct 19685 GAAAGTGTCG--CTCCCACCCGGAAGGCATAAGATCATCATCCTCGACGAGGCGGATAGT 19742 Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGA 1574146 | || | || || || ||||| ||||| |||||||| Sbjct 19743 ATGACTCCTGCTGCGCAACAGGCGCTGCGAAGGACCATGGA 19783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106933627969085