Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3 201 1e-46 seq1972 138 1e-27 seq2311 105 6e-18 seq1866 93.3 4e-14 >seq3 Length=70329 Score = 201 bits (222), Expect = 1e-46 Identities = 950/1474 (64%), Gaps = 70/1474 (5%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || ||| ||| |||||| || ||||||| || Sbjct 23895 ACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAG 23836 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | ||||| ||||| |||||| ||| | ||||||||||| |||| || || Sbjct 23835 CACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGC 23776 Query 138628 GAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTCCCACAAA 138684 || || || | ||||| |||| || | |||||||| || ||||||||||| Sbjct 23775 GAGTTGCGAAGCCCGTG---CTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGG 23719 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCT 138744 || || | |||||| |||||||| ||| ||| ||||| ||| Sbjct 23718 TCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCG 23659 Query 138745 TCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGAGCGCACC 138803 |||||| ||||| || || | |||| |||| | |||| || || || | Sbjct 23658 GCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGC 23600 Query 138804 ATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGG 138863 | ||| || || || |||||| || || || |||||||| ||| ||| Sbjct 23599 GTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACG- 23541 Query 138864 CATGCGG-AGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGAT 138922 ||| | | ||| ||||||| || || || || || || || | |||| || || | Sbjct 23540 CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGT 23481 Query 138923 GGCGCAGATTTGACGCTTTTGCGGCT--TCGATAGGATAATAGTTTACATCGATGATTTT 138980 | |||| || ||| || ||| || |||| ||||| ||||| | |||||||| || Sbjct 23480 GACGCATGTTGGAC--TTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTT 23423 Query 138981 GTTTAAATT-TCGCACGACCACCTTAGTCGTATGCTTT--AATCGTTCAAAATCGTATGT 139037 ||| | || | ||| || |||| | | ||| | | || | ||| ||||| || Sbjct 23422 GTTCAGGTTCTTGCA-GATGGCCTTGGCA--ACGCTGTGCAGACGCTTAAAGTCGTACGT 23366 Query 139038 GCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCA 139097 ||| ||| || ||| | || || | |||||||| | |||||| Sbjct 23365 C------TTG--GTC-ACTGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCA 23315 Query 139098 CACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTT 139157 ||| ||||| |||||||| ||||||| |||| || |||| |||||| || ||||| Sbjct 23314 CACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTT 23255 Query 139158 GATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATA 139217 |||||| || | || | || ||||| || ||||| || || ||||| || || | Sbjct 23254 GATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAA 23195 Query 139218 CGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTA- 139276 || |||| || || |||| ||| | ||| | || || ||||| | Sbjct 23194 AGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGT---ACCAG-----AGCTTCTGC 23143 Query 139277 --TTTGACG---CACGTAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA- 139328 ||||||| | | | || | ||| |||||| |||||||| || || Sbjct 23142 GCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAAC 23083 Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388 |||| |||||||| ||| | ||| | | |||| || || |||||||||||||| | Sbjct 23082 TCGT-CACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTC 23024 Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGC---GAACAGCAA 139445 ||||||| || ||| | | ||||||| ||||| || | ||| | || ||| ||| Sbjct 23023 GCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGC-- 22966 Query 139446 ATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAAC 139505 || ||||| | || ||| || ||| || || ||||| ||||| || Sbjct 22965 -TCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGAC 22907 Query 139506 GTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTG 139562 ||| | |||||||||||| | || || || | || || || ||| ||||| || Sbjct 22906 GTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTG 22847 Query 139563 ATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGT 139622 ||||||| || ||| || ||||| ||||| | ||| ||| | | ||| | |||| Sbjct 22846 GTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT-GCTGA 22788 Query 139623 T-CCGTTGGTGCTACGG--ATGG--GA-CTGTTGCGAGCTCGGACGTCATGTACATTGAT 139676 |||||||||| ||| ||| || | | ||| | |||| | ||| | |||| Sbjct 22787 CACCGTTGGTGC--CGGCAATGTACGAGCCGGTGCCA---CGGATGCAATGGATGTTGAG 22733 Query 139677 GCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATAC 139735 |||||| || ||| | ||||| || | | ||| || | | || ||||| || | Sbjct 22732 GCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTG-AGGGTATCGTAGATGC 22674 Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCG 139795 | || ||| |||| ||| || || || ||||| ||||| || ||||| | | Sbjct 22673 CGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGG 22614 Query 139796 TGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGT 139855 | ||||| || || ||||| ||||| || || | || |||||| | | || Sbjct 22613 TACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGT 22554 Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 |||| |||||||||||| | || ||| |||||||| ||||||| ||||||||| |||| Sbjct 22553 ACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 22494 Query 139916 TATGTTGGATCCGTTCGGCCACCGCGCCCTCGAT 139949 | || ||| || || || ||| ||| | ||| Sbjct 22493 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGAT 22460 >seq1972 Length=278426 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || |||||||| || | | Sbjct 201996 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 202055 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || ||||| ||||| Sbjct 202056 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 202115 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || ||||| || ||| | | |||| || || ||| Sbjct 202116 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 202175 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| |||||||| || || |||||||| | || | || ||||||| Sbjct 202176 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGGCG 202224 >seq2311 Length=83875 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || ||||| || || || ||||| || || | | Sbjct 80312 GATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTC 80371 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 80372 GGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCA 80431 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || ||||| ||||| | | | || || || || Sbjct 80432 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAA 80491 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||||||||| | || |||| || || Sbjct 80492 CATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 80539 >seq1866 Length=288946 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24727 AACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACA 24786 ||| ||||| || ||||| || || || || || | ||||| | || | || || Sbjct 192437 AACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGC 192378 Query 24787 AAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAA 24846 ||||| || ||||| || || || || ||||| || || || ||||||| ||||| || Sbjct 192377 CAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 192318 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| |||||| | | | | || || || ||||| || ||||||||||| || || Sbjct 192317 GCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCA 192258 Query 24907 CTTGGTGTTGCGATTGCGCGGAGG 24930 | | ||| | || |||| || || Sbjct 192257 CCTTGTGCTCCGTCTGCGTGGTGG 192234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449883512581400