Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 190 3e-42 seq2408 183 5e-40 seq555 104 4e-16 seq2256 87.8 3e-11 >seq3 Length=70329 Score = 190 bits (210), Expect = 3e-42 Identities = 278/393 (71%), Gaps = 15/393 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| |||||||| |||| ||| |||||||||||||||||||||| ||||||| Sbjct 22849 CTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCT 22790 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | ||||||||||| || | ||| | ||| | | | || | || | | ||| Sbjct 22789 GACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCC 22730 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| ||||||| ||||||||| | || || | || || || ||||||||||| || Sbjct 22729 GATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTC 22670 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||||||||| |||||||| | || |||||||||||| |||||| ||| || || Sbjct 22669 GATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACC 22610 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| ||||||||||| |||| || || | ||| ||| ||||| | ||| || Sbjct 22609 GGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTACGT 22550 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 ||| ||| | | | ||| ||| ||| | || ||||| ||||| Sbjct 22549 CTCGATGGCGCTCTCGA---TGTCCTGGCCGTGG--------AT----GCCGACAGCGAC 22505 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGAC 2073932 ||||||| ||||| |||||| ||||| |||| Sbjct 22504 TCGCATGAGCATGTGCTGGGGACGCTCTGCGAC 22472 Score = 134 bits (148), Expect = 2e-25 Identities = 292/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || |||||| |||| ||||| || | | ||||| ||||||| |||||||| Sbjct 23288 ACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGC 23229 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | | ||||| |||||||||||| ||| ||| | || ||||||||| |||| | | Sbjct 23228 TCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACT 23169 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || |||||| |||| | | |||| || | | | ||| ||| |||| Sbjct 23168 CGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCT 23109 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 ||||| ||||| || | |||| ||| ||| ||| || || || Sbjct 23108 CGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACT 23049 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC-- 2071871 || ||||| | |||||||||||||||| | | || | ||| || || || Sbjct 23048 CGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAG 22989 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 |||| ||| || | || ||||| || ||||| || ||||||||| ||||||||||| Sbjct 22988 GCAC--CCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTT 22931 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 ||||||||| | || | || ||| | |||||| || || | ||| |||||||| Sbjct 22930 GCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGC 22871 Query 2071992 GCCCTTGCGCTTGCCGCCGCC 2072012 || |||||| ||| || Sbjct 22870 ACCGGGACGCTTGTTGCCACC 22850 >seq2408 Length=74372 Score = 183 bits (202), Expect = 5e-40 Identities = 237/327 (72%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| || ||| ||||||||||| |||||||| Sbjct 34301 ACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCTT 34360 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 34361 CTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 34420 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 |||| || |||||||| |||||| | | || | | ||||||| | ||||| Sbjct 34421 CGCGACCAGACGCTCGGCGAAAGTGGC---ACGCTTGTCGCTGATCCATCGAAGAGCCCA 34477 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| | | | || || | || |||| |||| ||| || | || || Sbjct 34478 GTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTG 34537 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | || || || ||| ||||||||||| |||||||||||||| ||||||||||| || Sbjct 34538 CTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTTCTC 34597 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||||||| || || ||||| Sbjct 34598 CATCATGATCTGGAAACCGTAGAAGCA 34624 Score = 111 bits (122), Expect = 2e-18 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 794007 CCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCG 794066 |||||||| | |||| ||| |||||||| | |||||||| ||||||||||| | | Sbjct 34095 CCGAGCGATACCAGCAAGCGATCGGCGACATACTCAATGTATTGGCACATGAGCTTGCTG 34154 Query 794067 TTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACG 794126 ||||| ||||||||||| ||||| | || |||| | ||| | |||||||| || ||| Sbjct 34155 TTCATACCGATGAGCGCGACGGGGATTGATTCGCACAGGAACGCCTTCTCGATTTCCACG 34214 Query 794127 GCCTCGATGATGATCT 794142 ||||| ||||||||| Sbjct 34215 GCCTCAGTGATGATCT 34230 Score = 86.0 bits (94), Expect = 1e-10 Identities = 122/171 (71%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 796189 AGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAG 796248 |||||||| ||||| || || || ||||| || || || || ||| ||||||| Sbjct 34668 AGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCACATGCGAGATAAAG 34727 Query 796249 TGACGCTCGTCGTCGCTGAGCGAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACC 796305 || ||||| | |||| | ||| | |||||| | ||| | ||||||| | Sbjct 34728 TGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCTTGGAAAGGTCGATC 34787 Query 796306 TCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||| |||||||| ||||| ||||||||||| |||||||| | ||| ||| Sbjct 34788 TCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAAATC 34838 >seq555 Length=207461 Score = 104 bits (114), Expect = 4e-16 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 ||||||||| |||||||| || ||| |||||||||||||||||||||| ||||| Sbjct 195185 CACCTTCCGTCTCAACCTCAGTGTCACGCCTCCCTACAACGCCGACTTTGACGGTGACGA 195244 Query 429692 GATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGG 429751 ||||||| |||||||||| ||| || | | || ||||| || | || | | | Sbjct 195245 GATGAACTTGCACGTGCCACAGAGTGAAGAGACCCGTGCCGAGCTCTCGCAGATCGCCTG 195304 Query 429752 CGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGTGATGGA 429811 || | | | || || ||||| ||||||||||||||| |||| || | ||| ||| Sbjct 195305 GGTCCCGCGCCAGATTGTCTCGCCTCAGGCCAACAAGCCCGTCATGGGCATTGTGCAGGA 195364 Query 429812 CGCCCTC 429818 | | ||| Sbjct 195365 CACGCTC 195371 >seq2256 Length=90204 Score = 87.8 bits (96), Expect = 3e-11 Identities = 262/390 (67%), Gaps = 26/390 (7%) Strand=Plus/Plus Query 2019003 GACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGC 2019062 ||||||||| || |||| | | |||| | ||||| | ||||| || || Sbjct 19503 GACGGCAACTGTCCGCACCTGCTCATCTCGGGACTTCCCGGGATCGGCAAAACTAC---- 19558 Query 2019063 ATCGCGTGC-CTGGC--GCGCGTGCTCT--TGGGCGCGGCCGCCGACGAGGCCGTGCTCG 2019117 |||| |||| ||| | || ||||| || |||||| || | | |||| ||||||| Sbjct 19559 ATCG-GTGCTCTGTCTTGCTCGTGCGCTGCTGGGCGAAGCATACAAAGAGGGTGTGCTCG 19617 Query 2019118 AACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATCAAGCATCACG 2019177 ||||||| || || ||||| || || || || || || || | | |||||| ||| Sbjct 19618 AACTCAACGCTTCCGACGAACGAGGTGTCGATGTGGTTCGAAACAAGATCAAG----ACG 19673 Query 2019178 CTT-CG-AAAAGAA----TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATG 2019231 || || ||||||| ||| || || ||||| | || ||| | ||||||||||| | Sbjct 19674 TTTGCGCAAAAGAAAGTGTCG--CTCCCACCCGGAAGGCATAAGATCATCATCCTCGACG 19731 Query 2019232 AGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACA 2019291 |||| || | | || | || || || ||||| || ||| ||||||||| | ||| Sbjct 19732 AGGCGGATAGTATGACTCCTGCTGCGCAACAGGCGCTGCGAAGGACCATGGAGATCTACT 19791 Query 2019292 CCAACACGACGCGGTT-TGCGCTGGCCTGCAA-CACGTCGTCGATGGTCATCGAAGCCCT 2019349 | || || || |||| ||| | || ||||| || | | | |||||||| || | Sbjct 19792 CGAATACTACCAGGTTCTGC-TTCGCTTGCAATCAGAGCAAC-AAAATCATCGAACCCAT 19849 Query 2019350 CCAGAGCCGTTGCGCCATCTTGCGCTTTGC 2019379 |||| || || |||||||| || | ||| Sbjct 19850 CCAGTCGCGCTGTGCCATCTTACGGTATGC 19879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915979931724695