Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 499 3e-136 seq2408 168 6e-37 seq1972 123 2e-23 seq2311 113 4e-20 seq611 96.9 3e-15 >seq3 Length=70329 Score = 499 bits (552), Expect = 3e-136 Identities = 1260/1873 (67%), Gaps = 72/1873 (4%) Strand=Plus/Minus Query 147943 CGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGT 148002 ||| ||| || |||||||||||| | ||||||||||| ||| | ||| |||| || Sbjct 24217 CGGCTTG-GTTCGCAGATAGTACGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGT 24159 Query 148003 GCACCGACGACATGAGCGTGT----ACGTCGGGTGCGGCACAAACAGA---TTAAACGAC 148055 ||| ||| | ||||| ||| ||||||| ||| | | | || || | |||| Sbjct 24158 GCATCGAGG---TGAGC-TGTCCAAACGTCGG-TGCCGAA--AGGTGAATGTTGAGCGAC 24106 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCT-T 148114 || |||| || ||||| || ||||| || ||||| || |||| |||| || | | Sbjct 24105 TGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGTCGATGA-TCGCCTTCTGGCT 24047 Query 148115 CATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTG 148174 ||||||||| |||||||||||||| |||||| | || |||||||| | | ||| Sbjct 24046 GATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCAGGAATGCCTGGCACGTTCTG 23987 Query 148175 CACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTC 148234 | ||| |||| |||||| | || | || ||| ||| | | ||| |||| Sbjct 23986 GATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGTCGTTCCACAGGCCCTGCTC 23927 Query 148235 GATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCG 148294 | ||| || | || || | ||||||||||| ||||| || |||||||| ||||| Sbjct 23926 CACCAGCTCGCGCAACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG 23867 Query 148295 CAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353 ||| || | |||| |||| | || || || ||||||| ||||| ||||| | Sbjct 23866 -AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCG 23808 Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTT 148413 ||| || || ||||| || | ||||||||||||||| | ||| | || || | Sbjct 23807 TCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCT 23748 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 || ||| || ||||||||||||| || |||||| || || |||||||||||||| Sbjct 23747 TGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACT 23688 Query 148474 GCAGAATGCCGCGGCTA-GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCC 148532 ||| | | | | || | ||||| ||| |||||| ||| |||||| | | Sbjct 23687 GCA-ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCA 23629 Query 148533 GCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 ||||| ||||| | |||| || || ||| ||| ||| || ||||| || ||| ||| Sbjct 23628 GCCAGCTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTT 23570 Query 148592 GAGCAGC---GCC---GCCGACTCGCTTTCGTACGGCATACGC-AGCCGCACAAACGCGT 148644 || || ||| |||||||| ||| ||||| | | || ||||| | Sbjct 23569 CAGTCGCCGAGCCTCGGCCGACTCAA------ACG-CATACCCCATGATCATGAACGCAT 23517 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 | ||||||||||| || || | || || || ||||| |||||||| |||||| Sbjct 23516 CCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCT 23457 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGC-GCACCACCACCTTT 148763 ||||| |||||||| ||| |||||||||||||| || || ||| | |||| Sbjct 23456 CCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTG 23398 Query 148764 GTAATTCTGCGCAGCAATTCAAAATCGTACTT----GTCATCTACG---ATGCATCGGTT 148816 | || ||| |||| | ||| |||||| | |||| || | ||| | | Sbjct 23397 GCAACGCTGTGCAGACGCTTAAAGTCGTACGTCTTGGTCA-CTGGGTCAATGAACGTGGG 23339 Query 148817 CACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGAT 148876 || ||||| ||||| || |||||||| ||| ||| || || ||||||||||| | ||| Sbjct 23338 CAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGAT 23279 Query 148877 CTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 ||||| |||| ||| ||| |||||| ||| | |||||| || |||||||||| ||| Sbjct 23278 CTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTT 23219 Query 148937 GCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAA 148996 | |||||||||||||| ||| | || ||| || || ||| | || | ||| Sbjct 23218 GGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG- 23160 Query 148997 CCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCGTATAA 149053 || ||| | |||||| || ||| ||| |||||||||| |||||| Sbjct 23159 -CGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCG-AGCGACCCTCGGCCTCGTAGCG 23102 Query 149054 AGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGG 149113 || || ||||| ||| | || |||||||| ||| | ||||| ||||||| || || Sbjct 23101 CTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGG 23042 Query 149114 GCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCA 149173 ||||||||||||||| |||||| | | || | |||||| || ||||| |||||||| Sbjct 23041 GCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCA 22982 Query 149174 GAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGT 149232 ||| || || | ||| || |||| | ||| || || || ||| |||||||| Sbjct 22981 GAGTGCATAGAAGAGCTCACGCG-CACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGT 22923 Query 149233 TGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGC 149292 ||| | || | ||||| |||||| || |||||||| | || | || || | Sbjct 22922 CGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGAC 22863 Query 149293 GC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTT 149349 || ||||| ||||||||||||| |||| | ||||||| || || || | ||| || Sbjct 22862 GCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCA 22803 Query 149350 CAATGCC---ACTGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCAC 149404 ||||||| ||| || ||||| || | |||| ||| |||| | || | Sbjct 22802 CAATGCCGTTGCTGACA---CCGTTGGTGCCGGCAATGTACGA--GCCGGTGCCACGGAT 22748 Query 149405 TTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTCGCCG 149462 || | ||||| ||||||||| || ||||| ||| ||||| || | |||| | Sbjct 22747 GCAATGGATGTTGAGGCCGATGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTC-TTG 22690 Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 || || ||||||||| ||||| ||| ||||||||| | || |||||||| | Sbjct 22689 AGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAG 22630 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 | ||||| | || ||||| ||| | || || |||||| ||||| || || Sbjct 22629 AGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTT 22570 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 || ||| | | ||||| ||||| ||| || ||||| | ||| |||||||| | Sbjct 22569 TGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACA 22510 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAG 149702 ||||| ||||| ||||| ||||| || ||||| || || ||| || |||||| Sbjct 22509 GCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAA 22450 Query 149703 TAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCA 149762 ||| || || |||||| |||| || | ||||||| ||||| || ||| | Sbjct 22449 TAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATG 22390 Query 149763 ATGGCGGCGTCGA 149775 ||||| | ||||| Sbjct 22389 ATGGCCGAGTCGA 22377 >seq2408 Length=74372 Score = 168 bits (186), Expect = 6e-37 Identities = 527/804 (66%), Gaps = 39/804 (5%) Strand=Plus/Plus Query 120369 TTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGG--- 120425 ||||||||| ||||| || ||||| |||| |||||||||| ||||||| || ||||| Sbjct 34010 TTTCTCAAAGAAGTTGGTCTTGCCTTCCAACGAAATGTTGGTCATAAAGTCAAACGGACA 34069 Query 120426 -GTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAA 120484 || | | ||| ||| || | || | | ||| |||| || || || ||| Sbjct 34070 TGTGGAGC-CGT---AGTGCACTGGGTTTCCGAGCGATACCAGCAAGCGATCGGCGACAT 34125 Query 120485 ACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGC-- 120542 |||||||||| | ||||||| || |||||| || | | ||| || || | | Sbjct 34126 ACTCAATGTATTGGCACATGAGCTTGCTGTTCATACCGATGAGCGCGACGGGGATTGATT 34185 Query 120543 CG-ACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGT 120601 || || ||| | ||||||| || ||||| ||||| ||| || ||||| |||| Sbjct 34186 CGCACAGGAA---CGCCTTCTCGATTTCCACGGCCTCAGTGATGATCTTGAGCACCGTGT 34242 Query 120602 G-----GC-CGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCG 120655 || || || || || | | | || || ||||| |||||||||| Sbjct 34243 CTGGGTGCGCGCGCCTCCTGAGGTGGCTGA---------AGAGAAGGCAGGCAAAGTCCG 34293 Query 120656 TGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGC 120715 |||| || |||||||| ||||| || ||||||||| ||||| || |||||||||| | Sbjct 34294 TGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGAC 34353 Query 120716 CTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGA 120775 | | |||||| |||| || | ||| || |||||| || || | |||||| ||| Sbjct 34354 CGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGG 34413 Query 120776 TGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGG 120835 |||||| ||||||| |||||||| || || || |||| | |||||| | | Sbjct 34414 CGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAG 34473 Query 120836 CCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCATGTCGC 120895 |||| |||||||| | ||| ||| || ||||| |||| | ||| || | Sbjct 34474 CCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCAC 34533 Query 120896 GCTCGCCCTCCTC-CGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGTGCACG 120954 ||| | ||| || | | || | ||||||||| ||| | |||| ||| | | Sbjct 34534 GCTGCTCAGGCTCACGGATGTAAGTG-TCGATGAGCAGCGAGTAGGTCTCCGAGTGGATG 34592 Query 120955 CACTCGATCAGCACTTGCTGGTTGTAAAAGTACTGCGCCTC--CAGCTCGGGCACCGCCC 121012 ||| |||| | || ||| ||| | | ||||| | || | | | || Sbjct 34593 TTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTG---AACTTCC 34649 Query 121013 G--CTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAGAACGC 121070 | ||| | ||| | ||||| || ||||||| || | || ||||||||||| Sbjct 34650 GAACTG-AAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGC 34708 Query 121071 CAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGTGCGCAAAATCGTCATA 121130 ||||| ||| ||||||||| ||||| | ||| | ||||||| | | |||| Sbjct 34709 AAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGTCCCAGTCGTGGAG 34768 Query 121131 GTCCTTGGACAGGTCGACCTCCTC 121154 ||||||||| ||||||| |||||| Sbjct 34769 GTCCTTGGAAAGGTCGATCTCCTC 34792 >seq1972 Length=278426 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||||||||| || ||||| ||| | ||| || || || ||||||||||| | Sbjct 201964 GTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG--TCTTCGAGCTGCTTAC 201907 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| |||||||| || ||||| |||||||||||||| |||||| || Sbjct 201906 CAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 201847 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | || ||| || |||| || | ||| ||||| || || | Sbjct 201846 TGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCG 201787 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 201786 TCTTAACAAAAATCTGCAT 201768 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || ||| ||| | || |||||||||||||| Sbjct 202192 GTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCA-TCTTCGAGCTGCTTGCC 202134 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || |||||||| || ||||| |||||||||||||| |||||| ||| Sbjct 202133 GGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 202074 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || |||| |||| ||| ||||| || || || Sbjct 202073 GACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGT 202014 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 202013 CTTGACAAAGATCTGCAT 201996 >seq2311 Length=83875 Score = 113 bits (124), Expect = 4e-20 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| || | ||| ||| |||||||| Sbjct 80518 AAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGT--ACGTCCGTCCTCGA 80461 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | || || |||||||||||||| || ||||| |||||||| || Sbjct 80460 GCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGA 80401 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||| | || | ||||| | | |||||| |||| |||| ||| || | Sbjct 80400 TCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTAC 80341 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || || |||||||| Sbjct 80340 CCGTGAGGGTCTTGACAAAGATCTGCAT 80313 >seq611 Length=45555 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 |||| ||||||||||| || ||||| || |||||||| |||||| ||||| | | Sbjct 45555 TGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGT 45496 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 | | ||||||| | |||||| || | ||||| || |||||||||||||| || || | Sbjct 45495 CGATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTTGACAA 45436 Query 133651 AAATCTGCATGGC 133663 | || |||||||| Sbjct 45435 AGATTTGCATGGC 45423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405662886200