Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3 179 4e-40 seq1972 84.2 2e-11 >seq3 Length=70329 Score = 179 bits (198), Expect = 4e-40 Identities = 624/961 (65%), Gaps = 21/961 (2%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCG 147519 ||||| || || || ||||| || ||| ||| |||| ||||||||| | ||| ||| Sbjct 23334 GCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCG 23275 Query 147520 GCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCAC 147579 | |||| |||| ||| || || || | || | ||| ||||| || || ||| Sbjct 23274 GTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 23215 Query 147580 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTA 147639 ||||| ||| | || ||| | || ||| |||||| || | || | ||| | || Sbjct 23214 GCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG-CGTA 23156 Query 147640 TGC-AGGTCCTGCGCTCGCACCCGCTGCCGAT--AGCGGCCCTCGTTTTCGTACCGCTCG 147696 || | ||||||| || | ||| | |||| |||||| ||||| |||||| Sbjct 23155 CCAGAGCTTCTGCGCTTTGAC--GGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCG 23098 Query 147697 TACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACAC 147756 || | |||||||||||||| |||||||| ||||| || || || |||| | || ||| Sbjct 23097 TAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCAC 23038 Query 147757 ATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGC 147816 || |||||||| | ||| | | || | ||| || ||||| |||||||| || Sbjct 23037 ATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGT 22978 Query 147817 GCGTACATAAGATCGCGCGCTTTGCA----ATCCTCGGCGCCCATGTTGCGTTTCAAATT 147872 || || | || || ||||| ||| |||| || | ||||| || | Sbjct 22977 GCATAGAAGAGCTCACGCGC-ACGCACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTC 22922 Query 147873 AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG 147932 || | | ||| ||| | |||||| ||||||||||| | || | ||||| ||| Sbjct 22921 GAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACG 22862 Query 147933 C---TTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTC 147989 | || || ||||||||||| | |||| | ||||||| || ||||| | |||||| | Sbjct 22861 CTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCAC 22802 Query 147990 CAGGCCGCTCGCAG-TGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGT 148048 | |||| | || | ||||||||| || | |||| | | || | | Sbjct 22801 AATGCCG-TTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAAT 22743 Query 148049 GCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 | | ||| | ||| ||||| || ||||| ||| || || || ||| | || Sbjct 22742 GGATGTTGAGGCCGATGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTTGAGGGTA 22684 Query 148108 GTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGC 148167 ||||||||||||||| ||| | || | | || | || ||||| | | ||| Sbjct 22683 TCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGC 22624 Query 148168 GGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTC 148227 || | | || || || ||| || || || ||||| ||||| | ||||| | Sbjct 22623 GGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGAC 22564 Query 148228 ATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACG 148287 || | | |||||||| || ||| |||||||| | |||||| ||||| | ||||| Sbjct 22563 ATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACT 22504 Query 148288 CGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCA 148347 ||||||||||||||||| || || || || || | |||||| ||| | ||| | Sbjct 22503 CGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAA 22444 Query 148348 TTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCC 148407 ||||| || ||| | || || | ||||| | || || | ||||| ||||||| Sbjct 22443 CGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCC 22384 Query 148408 G 148408 | Sbjct 22383 G 22383 >seq1972 Length=278426 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| ||||||||||||||| | || || ||||||||||| ||||| | Sbjct 201961 GACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCG 201902 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||| ||||| |||||||| || || || || || | Sbjct 201901 AAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACG 201842 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| ||||||| || | || || || || || || || Sbjct 201841 TTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTA 201782 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 201781 ACAAAAATCTGCAT 201768 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || |||||||||||||| || || || |||||||||||| || |||| | Sbjct 202189 GATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCA 202130 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 |||| |||||||| ||||| ||||| |||||||| || || Sbjct 202129 AAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTC 202089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596276111800