Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1219 93.3 5e-14 >seq1219 Length=194361 Score = 93.3 bits (102), Expect = 5e-14 Identities = 425/668 (64%), Gaps = 42/668 (6%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 ||||||||||| |||||||| | |||| || ||| ||| || || || | ||| Sbjct 4955 ATCTTGAGCTTAGGGAAGGGAAGCGGGTCTCTCTCCAACTGCGCCTTGAGCGGTTGCACA 5014 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC-- 146989 |||| ||| ||||| || || |||| | | | | || || || || || Sbjct 5015 TGGTCCTTGTAAACGTGAGCATCACCCATTGCCAGTATGA-GTTCCTTGGGTTC--GCAA 5071 Query 146990 -CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 ||||||| | ||| | ||||||||| |||| || ||||| || |||||||| || || Sbjct 5072 TCGGTCACTTTGGCGATCATGTAGGTTAGCAACGCATAGCTAGCAATGTTGAAAGGTACA 5131 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT-------------- 147094 |||| || | ||| | || | |||||||| |||||||||||| | Sbjct 5132 CCCAACCCAAGGTCGCAGGAACGCTGGTACATCTGGCACGAGAGGTGCTTTTTACCTTGA 5191 Query 147095 CCC-------CGTCGGCCACGT---------AAAACTG-GCACAGGATGTGGCACGGCGG 147137 ||| | || ||| || | || || ||| | |||||||| ||||| Sbjct 5192 CCCTTCGAATAGGCGTCCAGGTTCGAGACAAAGAATTGAGCA-AACATGTGGCATGGCGG 5250 Query 147138 CAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTC-T 147196 |||||||| || || || |||||||| || || || | || | | || Sbjct 5251 AAGCGCCATCAGTTCGAGATCTGCCGGGTTCCATGCGCTGAGCAAGATACGAC-GATCGG 5309 Query 147197 CGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGT 147256 || || | ||||| ||||| || | ||| || || || ||||| || ||| Sbjct 5310 TAGGATTGTTGCGAATCTTGTCGATCACGGAAGCCAGTTGATCGACACCCTGACCGGCGT 5369 Query 147257 AGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTG 147316 ||| || | ||||| |||| | || |||||||| | ||| ||||| || || || | Sbjct 5370 AGTCGGTATCACAGTCTTTGTACGTAGCACCAAAGTGTCGCCATTGGAAACCATAGACGG 5429 Query 147317 GCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCG-CTTGAGAAACTCGGGGGAC 147375 | || || ||||| | | |||||| || || | | | ||| || | | || Sbjct 5430 GTCCTAGATCGCCTTCCCGACGATGCGAG-AGTCCACGAGAGTCGAGGAAGGCCCGAGAT 5488 Query 147376 CCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| | ||||||| ||| ||| | ||| ||| ||| ||| | || || || Sbjct 5489 CCGTTGCCGTCCCAAATGTGCACGCTCTTCTCGGTGAGAAGCTTGGCATCGGTTTTACCA 5548 Query 147436 CGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGC 147495 | | ||||||||| | |||||||| || || | | || || | ||||||||| ||| Sbjct 5549 CCCACGAACCAGAGTAACTCCTCCAGCACTCCGCGGAAGAACACTCGCTTGGTGGTGAGC 5608 Query 147496 AGGGGGAA 147503 || || || Sbjct 5609 AGAGGCAA 5616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583469729532000