Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2408 242 5e-58 seq3 183 4e-40 seq777 93.3 6e-13 seq555 91.5 2e-12 >seq2408 Length=74372 Score = 242 bits (268), Expect = 5e-58 Identities = 363/509 (71%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| |||||||| || ||||||||||| ||||| |||||||| |||||| ||| Sbjct 34841 GCAGATTTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCG 34783 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888 |||| | ||| | |||||| ||||| |||| | |||||||| || | Sbjct 34782 ACCTTTCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTA 34723 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| || || || || || ||| || ||||| ||||| ||||||||| | Sbjct 34722 TCTCGCATGTGCTTGCGTTCTT-CGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTT 34664 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | || || || | ||||| |||| || ||||| ||||||||| Sbjct 34663 GAGCGTTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATC 34604 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || ||||||||||| || |||||||| ||| || || Sbjct 34603 ATGATGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAG 34544 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || | || || | || ||| |||| |||| || | ||| || | | | ||| Sbjct 34543 CCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAG 34484 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTC 1456187 ||||||||||| | ||||||| | | || | | |||||| |||||||| || Sbjct 34483 GCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGT---GCCACTTTCGCCGAGCGTCTG 34427 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 |||| |||||||| |||||||||||||||||||||||| ||| | | ||||| ||| Sbjct 34426 GTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGG 34367 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||| |||||||||||||| Sbjct 34366 CTCAAGAAGCGCGGTCTCATGCCCGGTCT 34338 Score = 98.7 bits (108), Expect = 1e-14 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| |||||||| || |||||||| | ||| | |||| || | || || | Sbjct 34230 AGATCATCACTGAGGCCGTGGAAATCGAGAAGGCGTTCCTGTGCGAATCAATCCCCGTCG 34171 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 |||||||||| |||||| || |||||||||||| ||||||| | | ||||||||| || Sbjct 34170 CGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAATACATTG-AGTATGTCGCCGATCG 34113 Query 1456641 CCTGCTCGCGGCGCTCGG 1456658 | |||| | ||||||| Sbjct 34112 CTTGCTGGTATCGCTCGG 34095 >seq3 Length=70329 Score = 183 bits (202), Expect = 4e-40 Identities = 218/292 (75%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 |||||||| ||| || ||| || |||| |||||||| || ||||| || |||| | Sbjct 22562 ATGTCGCAAAAGTACTTTACCCACGCCTCGCCTACGCTCTTCAACGCCGGTACCCCGCAC 22621 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 |||||| ||||||||||| || | |||||||| || |||||||| |||||||| Sbjct 22622 CCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGCATCTAC 22681 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || |||||| || || | ||||||||| ||||||| |||||||| | | || Sbjct 22682 GATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGCCT--CAACA 22739 Query 260075 CACAAGG--TGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACG--GCCAGTCCAACGG 260130 || | | || | | | ||| | ||| | || |||||||||| | ||| |||||| Sbjct 22740 TCCATTGCATCCGTGGCACCGGCTCGTACATTGCCGGCACCAACGGTGTCAG--CAACGG 22797 Query 260131 CCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | ||||||||||||| ||||| || ||| |||| |||||||||||||||||| Sbjct 22798 CATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCTACGTCGACCAG 22849 Score = 89.7 bits (98), Expect = 7e-12 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| ||| | | || | |||||| |||| || | ||| | |||| Sbjct 23148 AGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCCTTTCATCCTGTACA 23207 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAAC 262210 ||||||||| ||||| | ||||||||| ||||||| ||||| | | || | ||||| Sbjct 23208 AGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGATCA-AGTGCTCCAAC 23266 Query 262211 CTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCT---C 262267 |||| ||||||||| || ||| | ||| ||||| ||||||||||| | Sbjct 23267 TTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAGTGTGCAACCTCGCC 23326 Query 262268 TCGAGCGTGGCCCTGCCCAAGTT 262290 |||| | || ||||||| ||| Sbjct 23327 TCGA---TCGCACTGCCCACGTT 23346 >seq777 Length=202895 Score = 93.3 bits (102), Expect = 6e-13 Identities = 170/246 (69%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||| |||||||||||||| ||||| || | | ||| Sbjct 67436 TACTCGACCTACATCTACCGTGTGCTCAAGCAGGTTCACCCTGACACTGGT-----ATC- 67489 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 || |||||| ||||| | || | |||||||| ||| | ||||| | || ||||||| Sbjct 67490 TCGAACAAGGCCATGGCCATTCTTAACTCGTTCGTCCAGGACATCTTTGAGCGCATCGCA 67549 Query 725019 ACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || ||||| |||| || || | ||||||| || ||| |||| |||| Sbjct 67550 ACTGAGGC--GTCGAAGCTCGCTTCGTACAACAAGAAGTCGACCATCTCGTCGCGAGAGA 67607 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 ||||||| || || ||||| || | | ||| || || ||| ||||||| |||| || | Sbjct 67608 TCCAGACGGCTGTCCGCCTCATTCTTCCCGGTGAGCTTTCCAAGCACGCCATCTCGGAAG 67667 Query 725137 GCACCA 725142 | |||| Sbjct 67668 GTACCA 67673 >seq555 Length=207461 Score = 91.5 bits (100), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 1817472 ACCGACGAGGGCGTCCATGACCAGGCCGATGATGGGCTTGTTGGCCTGCGGCGACACGGT 1817531 |||| ||| | |||| || | ||| |||| ||||||||||||||| ||||| || | Sbjct 195377 ACCGCAGAGCGTGTCCTGCACAATGCCCATGACGGGCTTGTTGGCCTGAGGCGAGACAAT 195318 Query 1817532 CTTGAGGGCCACGTTCATGGTGTGCGTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCAC 1817590 || | | | || | | |||| | |||||| || | ||| || ||| ||||| Sbjct 195317 CTGGCGCGGGACCCAGGCGATCTGCGAGAGCTCGGCACGGGTCTCTTCACTCTGTGGCAC 195258 Query 1817591 ATGGAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTT 1817650 || | |||||||||||| |||||||||||||| ||||||| |||||| ||||| Sbjct 195257 GTGCAAGTTCATCTCGTCACCGTCAAAGTCGGCGTTGTAGGGAGGCGTGACACTGAGGTT 195198 Query 1817651 GA 1817652 || Sbjct 195197 GA 195196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177569588145810