Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 228 1e-54 seq2408 102 1e-16 >seq3 Length=70329 Score = 228 bits (252), Expect = 1e-54 Identities = 899/1395 (64%), Gaps = 33/1395 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | || || || || ||||| || ||| |||| ||| || || || Sbjct 23863 GTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGA 23804 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| ||||||| || || ||| ||||| || | || ||| | Sbjct 23803 AGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGC 23744 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGAGCTT-GGTTTCACCTTCCCACATGTCAAACTGAA 110885 |||||| | ||||||| | | | || | ||| |||||||||| |||| | Sbjct 23743 CTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTGACCC-CCCACATGTCGTACTGCA 23685 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || || || ||||| || || | | || || ||| || || ||||||| Sbjct 23684 ACTCACCCTGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCA 23625 Query 110946 ATTCACA-GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-T 111003 || || | |||| ||||| | ||||| || ||||| |||||||| | | |||| | Sbjct 23624 GCTCGCACGATCGC-TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGT 23566 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 | || | || | | || ||||| || || | | || || ||||||| || || Sbjct 23565 CGCCGAGCCT-CGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCC 23507 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGG 111123 |||||||| | || || || | ||| ||||| || ||||| ||||| ||| || || Sbjct 23506 CTGAACACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGG 23447 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| | || |||| |||| ||| || || ||| | ||| | | || Sbjct 23446 ATAGTAGTTAATGTCGATGATCTTGTTCAGGTTCTTGCAGATGGCCTTGGCAACGCTGTG 23387 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCT---TCATTGACATACTTTGGAAGGGCGAT 111240 || | | | || | || ||| || ||| ||| || | || || ||||| Sbjct 23386 CAGACGCTTAAAGTCGTACGTCTTGGTCACTGGGTCAATGA---ACGTGGGCAGTGCGAT 23330 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 || || | ||||| || ||| ||| || | | ||||||| | || || ||||| Sbjct 23329 CGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACA 23270 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||||| | ||| ||||| || | ||||| ||||| ||||| |||| || || Sbjct 23269 CAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTC 23210 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA- 111419 |||||| || ||| | || | |||||||| |||||||| | ||| || || | ||| | Sbjct 23209 CTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAG 23150 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | || ||| | | || || || | || ||||| |||||||| ||||||| Sbjct 23149 CTTCTGCGCTTTG-ACGGTGCGCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGC 23091 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 |||||||| ||||| ||||| ||||| || || || || || | || | Sbjct 23090 GCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCG 23031 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | || | ||| |||| ||||||||| || || || | ||| || | | | Sbjct 23030 ACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGA 22971 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCA 111659 |||| || | || |||| || | || ||||| || | || |||||||| | Sbjct 22970 AGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAA 22911 Query 111660 TGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------C 111713 || |||| ||||||||| |||| || | || | | || ||||| | Sbjct 22910 AGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGG---GACGCTTGTTGC 22854 Query 111714 CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCAT 111773 || | || | || |||||||| ||| ||| || ||||| ||||| || | ||| || | Sbjct 22853 CACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGT 22794 Query 111774 --CTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATG 111829 |||| ||| || || || ||| ||||| || | | | ||||||| Sbjct 22793 TGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGG--TGCCACGGATGCAATGGATG 22738 Query 111830 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 111889 | | || || || || ||| ||| ||||| ||||| | | || || | ||| Sbjct 22737 TTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAG 22678 Query 111890 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 111949 || |||| ||| ||||| ||||| ||| | ||||||||| || | |||||| Sbjct 22677 ATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGC 22618 Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GACATCTT 112008 || ||||| || |||||||| || || | ||||| | || ||| || | ||||| Sbjct 22617 GGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAG-TACTTTTGCGACATAAG 22559 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||| ||||| | | | || ||||| | ||||||||||||| ||||| ||||| Sbjct 22558 GTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCAT 22499 Query 112069 GAACATGTACTGTGG 112083 || ||||| ||| || Sbjct 22498 GAGCATGTGCTGGGG 22484 >seq2408 Length=74372 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| |||||||| || || || || || || || ||||| ||||| Sbjct 34283 GGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACC 34342 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | |||||| || ||||| ||||| Sbjct 34343 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGAT 34402 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||||| || |||||||| | || || |||||||| Sbjct 34403 GCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628012334748000