Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 168 8e-37 seq2408 125 9e-24 >seq3 Length=70329 Score = 168 bits (186), Expect = 8e-37 Identities = 909/1429 (64%), Gaps = 49/1429 (3%) Strand=Plus/Minus Query 118155 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 118213 |||||||||||||| || | ||| ||||| |||| ||| || ||||| |||||||| Sbjct 23889 AACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTC 23831 Query 118214 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 || |||| ||| || || || || || ||||| ||||||| || || ||| Sbjct 23830 GTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTT 23771 Query 118274 ACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTA---GTTGAG 118327 || || || ||| | | || ||||||| | ||||||| | || Sbjct 23770 GCGAAGCCCGTGCTTGGCGATCTTGG---CCTTGAGCTCCGCCCAGTCCCACAGGTCCGA 23714 Query 118328 CTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTC 118387 | || ||||| ||||| || |||| | ||| || || || ||||| || | Sbjct 23713 CGGCGTGACCCCC---CACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAGCCGGC 23657 Query 118388 AAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGT 118446 | ||||| || ||| | ||| |||| ||| | | |||| || || || |||| Sbjct 23656 GTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCGC-TCCAGTGCGGCGT 23598 Query 118447 GATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 118506 | || || || ||||| || | | |||| | | |||||| | || |||||||| | Sbjct 23597 GGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCCGACTCAAACGC-A 23539 Query 118507 GTCGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 118565 | || | || || ||||||| || || || ||||||| || || || || || Sbjct 23538 TACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGA 23479 Query 118566 CTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTT 118625 | ||| || ||||| || || ||| || ||||| | || | ||||| | | | || Sbjct 23478 CGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTC 23419 Query 118626 AGATTTTTGGTGACAACCTTTGTGA---TTTCATGAAGCTTT---TCGTAA-TCAAAACT 118678 || || ||| || |||| | | | | || |||| ||||| || | Sbjct 23418 AGGTTCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGTACGTCT----T 23363 Query 118679 GCGAGTCTCT---TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGA 118735 | ||| || ||| ||| || | || || ||||| || || || || ||||| | Sbjct 23362 G---GTCACTGGGTCAATGA---ACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGC 23309 Query 118736 GGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGT 118795 ||| || | | ||||||| || || || || |||||||| || | ||| || || Sbjct 23308 CACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGT 23249 Query 118796 GCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGT 118855 ||| | |||||| || || ||| ||| || |||||||| || ||| | || | Sbjct 23248 GCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTT 23189 Query 118856 CCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG 118914 |||||||| || || |||| ||| || || | ||||| | || || ||| || ||| Sbjct 23188 GCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGC-GCTTTGACGGTGC 23130 Query 118915 CGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG 118974 || | || ||||| ||||||| ||||||| |||||||| ||||| | Sbjct 23129 GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGC 23070 Query 118975 CCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAA 119034 || | || || || || | ||||| | ||| ||||| | || || ||| | Sbjct 23069 AGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGA 23010 Query 119035 CCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTT 119094 ||| |||||||||||| || || | |||||| || ||||||| || || || | | Sbjct 23009 CCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCT 22950 Query 119095 CTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTT 119154 | || | || || || |||| || | || || | || |||| |||||| |||| Sbjct 22949 CCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTT 22890 Query 119155 CCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAG 119211 | | ||| | || | | || ||| ||| |||||| || || | ||||| Sbjct 22889 CAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAG 22830 Query 119212 TGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA 119271 || ||| || || || ||||| || | || || | | || || || || || Sbjct 22829 TGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAA 22770 Query 119272 --TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTT 119329 |||||| | || | | || ||||||| | || || || || ||| ||| Sbjct 22769 TGTACGAGCC--GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTT 22712 Query 119330 TGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATT 119389 ||||| || || | |||| | ||||||| || |||||||||||| |||| | Sbjct 22711 GGAGATCATGGCACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCAT 22652 Query 119390 TGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGG 119449 | | |||||||| ||| | || || || ||||| ||||||||||| || || Sbjct 22651 GGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGG 22592 Query 119450 TGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAA 119508 | |||||| | || ||| ||| ||||| || ||| ||||| | | || | Sbjct 22591 CGAGGCGTGGGT-AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGA 22533 Query 119509 TGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 |||| | ||||| || |||| | ||| ||||| | ||||| ||||| Sbjct 22532 TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCATGTGCTGGGG 22484 >seq2408 Length=74372 Score = 125 bits (138), Expect = 9e-24 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| ||| ||| |||||||||||||| |||||||| || || ||||| ||||| Sbjct 34283 GGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACC 34342 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | |||||| |||| |||||||| ||||| ||||| Sbjct 34343 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGAT 34402 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| || || ||||| | |||||||| || || Sbjct 34403 GCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAA 34441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618415835247800