Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 280 2e-70 seq2408 123 3e-23 seq2397 118 1e-21 seq1 84.2 3e-11 >seq3 Length=70329 Score = 280 bits (310), Expect = 2e-70 Identities = 913/1395 (65%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || |||| || || || | ||||| || | | Sbjct 22484 CCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCC 22543 Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| ||| ||| || | ||||| | || || ||||| Sbjct 22544 ATCGAGACGTACAACCTTATGTCGCAAAAGTACTTT-ACCCACGCCTCGCCTACGCTCTT 22602 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || ||||| || || || | || ||||||||| | ||| ||||| || Sbjct 22603 CAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGA 22662 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| |||| ||||| | || || | | ||||| ||||| ||| ||| || Sbjct 22663 CTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGG 22722 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 || || || | |||||||| | | | || |||||| || || || Sbjct 22723 TGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGG--CTCGTACATTGCCGGCACC 22780 Query 104519 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 || ||| |||| | || ||| | || ||||| ||||| || ||| ||| ||||||| Sbjct 22781 AACGGTG--TCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCT 22838 Query 104577 ATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | || | || | ||| ||||| || | | || | || |||| |||| Sbjct 22839 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCTATTTACATTGAACCAT 22895 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||| |||| || | |||||||| || |||| ||||| || | ||||||| || Sbjct 22896 GGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGC 22955 Query 104691 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 | ||| || || ||||||| || |||||| | || ||||||||||||||||| || ||| Sbjct 22956 G-TGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAG 23014 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 ||| ||| | ||||| ||| | || || || || |||||||| |||| | Sbjct 23015 CAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTGCTAC 23074 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-AC 104868 ||||| |||||||| ||| ||| ||||||| || ||||| ||| ||| || Sbjct 23075 GGTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTCGA-AGCGCAC 23133 Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || ||| || || | | ||| | || || ||| |||| || |||||||| || | | Sbjct 23134 CGTCAAAGC-GCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACC 23192 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | ||| || ||||| |||||| |||| ||||| || || ||||| | || || Sbjct 23193 CTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGA 23252 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 ||||| | ||||| | ||||| || ||| | || | | | || ||| ||| | Sbjct 23253 TCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCCGACGAGGTGGCAG 23312 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 |||| |||||||| || ||||| || |||| || | || |||| ||| ||||| | | Sbjct 23313 TGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCATTGACCCAGTGACCAAGACGTACG 23372 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | | || ||| ||| | || | || ||| ||||| |||| | || | Sbjct 23373 ACTTTAAGCGTCTGCACAGCGTTGCCAAGGCCATCTGCAAGAACCTGAACAAGATCATCG 23432 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | | || | || || || ||| || || || || || ||| | |||||||| || | Sbjct 23433 ACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAACATGCGTCACCGTCCGATCG 23492 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 105285 | ||||||||||||| || ||||||| ||||| || | | | | || ||||| || Sbjct 23493 GGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCATGG--GGTATGCGTTTGAGTC 23550 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 | ||| || | | | || | || || ||||||||||| || |||||||| || || Sbjct 23551 GGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGAGACCATCTACCACGCCGCACTGGA 23610 Query 105346 GGCGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 |||| || | ||| |||| ||| | || || || || | | || || || Sbjct 23611 -GCGATCGTGC-GAGCTGGCTGAGCAGCACGGCAGCTACGAGACGTACGCCGGCTCGCCC 23668 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGA 105462 ||||| || || | | | || | || ||||||| ||| | | | | | | || Sbjct 23669 GCTTCGCAGGGTGAGTTGCAGTACGACATGTGGG-GGGTCACGCCGTCGGACCTGTGGGA 23727 Query 105463 CTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| | ||||||| ||| || | || ||||| ||| || || |||| Sbjct 23728 CTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTTCGCAACTCGCTGCTGCTGGC 23787 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 || ||||| || || || || || ||| |||| ||| || ||||| || || || Sbjct 23788 ACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTTAACGAGTGCTTCGAGCCTTA 23847 Query 105583 CACGACGAACATCTA 105597 ||| | |||||||| Sbjct 23848 TACGTCCAACATCTA 23862 >seq2408 Length=74372 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||||| || |||| ||||| || ||||| ||||| ||||| || || ||| Sbjct 34441 TTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTC 34382 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 | | || | |||||||||||||| ||||||||||| |||||| |||||||||||| Sbjct 34381 GCCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAG 34322 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||||| ||||||||||| || ||| || ||||| Sbjct 34321 CTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGC 34284 >seq2397 Length=233832 Score = 118 bits (130), Expect = 1e-21 Identities = 204/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| ||||||||||||||||| ||||| |||| ||| ||| ||||||||||||| | Sbjct 177945 TTGATGATGAGACCCTTGATGTGCGAACCATCGTGATCCTGATCAGTCATGATCATGATA 177886 Query 169220 CGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGAT 169278 | || || || ||||| | || | || | ||| || || || || || | ||| Sbjct 177885 CTGCCGTAGCGCAAGCT-GTTGGTGTCGAGGTACTGCTTGCCATGCTGGAGGCCGAGGAT 177827 Query 169279 CTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAAC 169338 || ||||| | |||| || ||| ||| ||| | || || ||||| || Sbjct 177826 CTCCTTGATGGCCTTGATTTCGGCGTTCTTCATGATCTGGTCGTGGGACGCTTCGCGCAC 177767 Query 169339 ATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAG 169398 || ||| ||||| ||||| ||||||||||||| || | || || || || Sbjct 177766 GTTGAGCAGCTTACCACGGAGAGGAAAGACACCGTAGTTGTCTCTTCCGACTTCGACGAT 177707 Query 169399 ACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACA 169452 || || || ||||| | ||| ||||||||||| ||||||| |||||| ||||| Sbjct 177706 GCCGGCCACGGCGAGCGACTTGGCCGAGTCACCTTCGGTGAGGATGAGTGTACA 177653 >seq1 Length=306704 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/240 (69%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 9694 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT---TGATTTTCGCGAGC 9750 ||| || | |||||| ||||| || ||||||| |||||| || || || | | || Sbjct 79114 CTTGCCGATGGCATCGATCTCGTCGATGAAGATGATGCAGGGCGCGTGCTTCTTG---GC 79170 Query 9751 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9810 | |||| | || || || || ||| || ||||||||||||||||| ||||| | Sbjct 79171 GTTAGCAAACATGTCTCGCACTCGGCTGGGACCGACACCAACAAACATCTCGACAAACTC 79230 Query 9811 TGCGGCGGA-ACATTGGAT--GAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 | | || || ||| ||| || ||| || ||||| ||| | || ||| || Sbjct 79231 GGAACCCGAGAC---GGACAGGAAAGGCACACCAGCCTCACCAGCAGTCGCCTTGGCCAG 79287 Query 9868 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || |||||||| ||||| || ||||| ||| | ||||| || || ||||||||||| Sbjct 79288 CAGCGTCTTACCGGTACCGGGAGGACCCGAGAGAATAGCACCACGCGGGATCTTGGCGCC 79347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242536646200