Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1809 275 2e-68 seq1972 165 2e-35 seq1866 107 6e-18 seq1 93.3 1e-13 >seq1809 Length=137139 Score = 275 bits (304), Expect = 2e-68 Identities = 886/1360 (65%), Gaps = 25/1360 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| || || ||||||||||| ||| Sbjct 37518 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 37459 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || || || |||||| | || || || ||||| || || || ||| Sbjct 37458 GTCGAGGTCATTGCCAACGACCAGGGTAACCGCACTACCCCCTCATATGTCGCCTTCACC 37399 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | ||||| ||| | || || || || | || || || | || Sbjct 37398 GACTCGGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCACAAC 37339 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || || || || ||||| | || || | ||||| ||| | || || Sbjct 37338 ACCGTCTTCGACGCCAAGCGTTTGATCGGCCGCAAGTTC----GACGACGCTGAGGTCCA 37283 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 ||||| | || || | ||||| | ||| | | ||||| || || || Sbjct 37282 GTCTGACATGAAGCACTGGCCTTTC---GAGGTTACCTCGGTCGGTGGCAAGCCCCAGAT 37226 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTA-CCCGAAGAAATTTCATCAATGG 349553 | ||||||| || ||||| || || | ||| |||||||| || ||||| |||| Sbjct 37225 TCGCATTGAATACAAGGGTGAG-AAGAAGACTTTCACTCCCGAAGAGATCTCATCCATGG 37167 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 || | | || ||| || | ||| || || || | |||| || || | ||||||| Sbjct 37166 TTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACCGTCAAGGATGCTG 37107 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCA 349673 | | ||||| || || || || || || | ||||| || || || |||||||| | Sbjct 37106 TCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACCAAGGATGCTGGTA 37047 Query 349674 GCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCAT 349733 |||| |||| | || || | | || || || || ||||||||||| || || || | Sbjct 37046 TCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTT 36987 Query 349734 ATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 | || || || || | || || || || ||| |||| ||||| ||| | ||||| | Sbjct 36986 ACGGTCTCGACAAGAAGACCGAGGGTGAGAAGAATGTTCTCATTTTCGATCTCGGTGGAG 36927 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 |||| || |||||||| || || || |||| ||||| || || || || || || || | Sbjct 36926 GTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGGCCACCG 36867 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 ||||||| || ||||||||||| || || ||||| || |||||||| || ||||| Sbjct 36866 CTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTTGTCC 36807 Query 349914 AAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGC 349972 | || || ||||| |||| || | ||| | || || | || | ||||| Sbjct 36806 AGGAGTTCAAGCG-CAAGAACAAGAAGGACTTGACCACCAACGCTCGTGCCCTTCGTCGT 36748 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | ||||| ||||| ||||| |||||| | | || || || | || || | || Sbjct 36747 CTTCGCACTGCTTGTGAGCGTGCCAAGCGTACTCTCTCGTCGGCTGCTCAGACGACCATC 36688 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || ||| || | || |||| | || || || ||||| || || Sbjct 36687 GAGATCGACTCGCTCTTTGAGGGTATCGACTTCTACACCTCGATCACCCGTGCCCGTTTC 36628 Query 350093 GAAGAATTATGTATGGATCT-TTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAA 350151 || || | ||| || || || | | | || || || ||||| || || || | Sbjct 36627 GAGGAGCTCTGTGGTGACCTCTTCTCGCAC-ACCATTGAGCCTGTCGAGAAGGTTCTCCG 36569 Query 350152 AGA-TGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 || | ||| | || | | || | || | || | || | || ||||||||||| | Sbjct 36568 CGACTCCAAGATTGACAAGGGCTCTG-TTCACGAGATCGTCCTTGTCGGTGGTTCTACTC 36510 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGAT 350270 |||| || || || || || | || | || || || || || || | | | | Sbjct 36509 GTATCCCCAAGGTGCAGAAGCTGCTCACCGACTTCTTCAACGGTCGTGAGCTTAACAAGT 36450 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTG 350330 | || || || ||||| |||||||| || ||||| ||||| ||||| | ||| | || | Sbjct 36449 CGATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCCGCCATTCTTTCGG 36390 Query 350331 GAAATAAGAGTTC---TAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | | | | ||| || | | | || || | || || ||||| |||| || ||| Sbjct 36389 G---TGACACTTCAGAGAAGACTCAGGACCTGCTCCTTCTCGATGTTGCTCCTCTCTCGA 36333 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTAC 350447 | || | || || | |||| || | || ||| || || || | ||||| | Sbjct 36332 TGGGTATCGAGACCGCCGGTGGTGTCTTCACACCTCTCATCAAGAGGAACACCACTGTGC 36273 Query 350448 CTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTC 350507 | || || ||||| | | || || || | ||| || || ||||| | ||| || | Sbjct 36272 CCACCAAGAAGTCGGAGATCTTCTCGACTTATGCCGACAACCAGCCCGGTGTATTGATCC 36213 Query 350508 AAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAA 350547 | || || || || || ||||| ||||| ||||| || || Sbjct 36212 AGGTGTTCGAGGGCGAGCGTGCCCGCACCAAAGACAACAA 36173 >seq1972 Length=278426 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | || | ||||| ||||| || |||||||| ||||| || || || Sbjct 201998 CATACCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTC 201939 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 201938 GGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGG 201879 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || || || || || || || | || || | || Sbjct 201878 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTC 201819 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| ||||| || || || || || |||||||||||||| Sbjct 201818 GACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 201768 Score = 134 bits (148), Expect = 4e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| |||||||| || || || ||||| || || || || | || || ||||||| Sbjct 202205 GACCAAG-TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTT 202147 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | || || || || |||||||| ||||| ||||||||||||||||| ||||| || || | Sbjct 202146 CGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTT 202087 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || || || || || | || || | || ||||| || || | |||| Sbjct 202086 GGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCT 202027 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||| |||||||| Sbjct 202026 TGCCTGTGAGCGTCTTGACAAAGATCTGCAT 201996 >seq1866 Length=288946 Score = 107 bits (118), Expect = 6e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || ||||| || || || || || || || || || || || Sbjct 192231 ATACCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCC 192290 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || ||||| || || || || || || ||||| || || ||||| || || Sbjct 192291 GAGAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGG 192350 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 ||||| || || || |||||||| || || || ||||| || || | || || | || Sbjct 192351 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCC 192410 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || ||||| |||| ||||| || ||| |||| Sbjct 192411 ACCTCAAGGGTAATGGTCTTACCTGTTGGTGT 192442 >seq1 Length=306704 Score = 93.3 bits (102), Expect = 1e-13 Identities = 226/341 (66%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || ||||| || | |||||| || || | || | | || || | || ||| | || Sbjct 305181 AAGATGAAAGAGACTGCTGAGGCTTACCTCGGCCACAAGGTCACCCACGCCGTTGTCACC 305122 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || |||||||| || || || ||||| || || || |||||||||| ||| || Sbjct 305121 GTTCCCGCCTATTTCAACGACGCTCAGCGACAGGCCACTAAGGATGCTGGCACCATCGCT 305062 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || || |||| | || || || || ||||| || || || || || || Sbjct 305061 GGTCTTAACGTGCTGCGAATCGTCAACGAGCCTACCGCTGCTGCCATCGCTTACGGTCTC 305002 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| ||| | || || ||| ||| | || ||||||||||| Sbjct 305001 GACAAGAAG---GACGGTGAATCGCAGATCATTGTTTACGATCTTGGCGGTGGTACTTTC 304945 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 || || || || || | |||| ||| | || || ||| || ||||| || || Sbjct 304944 GACGTGTCGCTCCTCTCGATTGACTCGGGCGTCTTCGAGGTTCTTGCCACTGCCGGCGAC 304885 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTC 349902 || || |||||||| || || ||||| || || |||||| Sbjct 304884 ACTCACCTTGGTGGTGAGGACTTTGACAACCG---CGTTTC 304847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515205767436515