Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3 338 7e-88 seq2397 93.3 5e-14 >seq3 Length=70329 Score = 338 bits (374), Expect = 7e-88 Identities = 547/779 (70%), Gaps = 6/779 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | || |||||||| | ||| | | | | | ||||||||| Sbjct 22497 TCATGCGAGTCGCTGTCGGCATCCACGGCCAGGACATCGAGAGCGCCATCGAGACGTACA 22556 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| |||||| |||| || || |||||||| ||||| Sbjct 22557 ACCTTATGTCGCAAAAGTACTTTACCCACGCCTCGCCTACGCTCTTCAACGCCGGTACCC 22616 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||| | ||| |||||||| || | ||||||||||||||||||||||||| Sbjct 22617 CGCACCCGCAGCTCTCGTCGTGCTTCCTTGTTACCATGAAGGATGACTCGATCGACGGCA 22676 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| |||||| ||||||||| | | ||||| ||||| || Sbjct 22677 TCTACGATACCCTCAAGACTTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGCCTCA 22736 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 || | | |||||| | |||| | || || || ||||| ||| | | | Sbjct 22737 ACATCCATTGCATCCGTGGCACCGGCTCGTACATTGCCGGCACCAACGGTGTCAGCAACG 22796 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || ||||| ||||||||||||||||||||||| || || |||||| |||||||||| Sbjct 22797 GCATTGTGCCCATGCTCCGCGTCTTCAACAACACTGCGCGCTACGTCGACCAGGGTGGCA 22856 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | || || || ||| | || || |||||| | ||| | | |||| Sbjct 22857 ACAAGCGTCCCGGTGCCTTTGCTATTTACATTGAACCATGGCACTCGGACGTCTTTGAGT 22916 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACA 53671 | ||||| ||||| ||| || || | || ||| |||| ||| ||||| || || Sbjct 22917 TCCTCGACCTGCGCAAGAACCACGGAAAGGAGGAGGTGCG-TGCGCGTGAGCTCTTCTAT 22975 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 || || ||| | || || ||||||||| | | ||| ||| || ||| || |||| || Sbjct 22976 GCACTCTGGGTGCCTGATCTCTTCATGAAGAGGGTCGAGCAGAACGGCGACTGGTCGCTC 23035 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| ||||||||||| || || | | || ||||||||| |||||| | | Sbjct 23036 ATGTGCCCCAACGAGTGCCCTGGTCTGGCCGACTG-CTACGGTGACGAGTTTGAGCGCCT 23094 Query 53791 GTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || || || |||| | |||| |||| ||| | ||||| |||| || | | Sbjct 23095 CTA-CGAGCGCTACGAGGCCGAGGGTCGCTCGAAGCGCACCGTCAAAGCGCAGAAGCTCT 23153 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || | || |||||| || ||| |||||||| | || | ||| |||||||| Sbjct 23154 GGTACGCCATCCTCGAGTCACAGACCGAGACGGGCAACCCTTTCATCCTGTACAAGGACG 23213 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATGT 53968 | | |||| |||||||||||||||||| ||||| ||||| | |||||| ||| Sbjct 23214 CCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACGATCAAGTGCTCCAACTTGTGT 23272 Score = 183 bits (202), Expect = 3e-41 Identities = 535/811 (66%), Gaps = 36/811 (4%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||||||||| | ||||||||| || ||||| ||| || | ||||||||||||||| Sbjct 23413 GAACCTGAACAAGATCATCGACATTAACTACTATCCGGTCGAGGAGGCGCGCAAGTCCAA 23472 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| || |||| |||||||| |||||| | || || |||||||| | Sbjct 23473 CATGCGTCACCGTCCGATCGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATGATCAT 23532 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATC-TTCAGTCGCA 55316 || | | || || |||| ||||| | | ||| | | ||| || || | || Sbjct 23533 GGGGTATGCGTTTGAGTCGGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGAGAC-CA 23591 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTACGAG 55375 ||||| || || || ||| ||||| | |||||| | ||| | || | ||||||| Sbjct 23592 TCTACCACGCCGCACTGGAGCGATCGTGCGAGCTGGCTGAGCAGC-ACGGCAGCTACGAG 23650 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGG---CA-- 55430 |||| | | ||||| ||| |||| | |||| ||| | ||||| || Sbjct 23651 ACGTACGCCGGCTCGCCCGCTTCGCAGGGTGAGTTGCAGTACGACATGTGGGGGGTCACG 23710 Query 55431 -AGTCTGACCCCATGTTTGAC------AAGTTGAAGCATGACATTCACTTGTGGGGCCTA 55483 ||| |||| ||| ||| || | ||| | || | | || || Sbjct 23711 CCGTCGGACC---TGTGGGACTGGGCGGAGCTCAAGGCCAAGATCGCCAAGCACGGGCTT 23767 Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| |||| || ||||| ||||| |||||| ||||||| ||||| Sbjct 23768 CGCAACTCGCTGCTGCTGGCACCGATGCCGACCGCTTCGACGAGTCAGATCCTGGGCTTT 23827 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| || ||| ||||||||||| || || || || |||||| Sbjct 23828 AACGAGTGCTTCGAGCCTTATACGTCCAACATCTACTCTCGGCGTGTGCTCGCGGGTGAG 23887 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || | ||| | | | || ||| | || | ||||||| Sbjct 23888 TTCCAGGTGGTGAACCCGTGGTTGTTGCGCGAGCTGGTGGAGCAGGGCCTGTGGAACGAC 23947 Query 55664 CAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---GAGATT 55717 ||| |||| || || || | || |||| || || ||||||| || | ||| Sbjct 23948 ACGATGAAGAACCGTATCATCGCGC---ACGGCGGATCGATCCAGAACGTGCCAGGCATT 24004 Query 55718 CCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 ||| || ||||| || | ||| |||||| |||||||| |||||| | || Sbjct 24005 CCTGACCGCATCAAGAAGCTGTACAAGACGGTCTGGGAGATCAGCCAGAAGGCGATCATC 24064 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT----CTT 55833 |||||| ||| || || || |||| ||| |||||| ||||| || ||||| ||| Sbjct 24065 GACATGGCTGCGGACCGAGGAGCGTTTATCTGCCAGTCGCAGTCGCTCAACATTCACCTT 24124 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 | | | || ||| | || | | |||||||||||||||||| ||||| ||||| Sbjct 24125 TCGGCACCGACGTT---TGGAC-AGCTCACCTCGATGCACTTTTACGGCTGGAAAAAGGG 24180 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACC 55924 |||||||||||||| |||||||||||| ||| Sbjct 24181 ACTCAAGACGGGTACGTACTATCTGCGAACC 24211 >seq2397 Length=233832 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/107 (80%), Gaps = 4/107 (4%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGC--GCTGCTCCTCGTCG 119140 |||||| |||||||||||||| ||||| || |||||||| || ||| || | |||| Sbjct 176746 GTTGGCGAGCTTGGCACCGTAACCGTTACGGCCACCGGTGACTTTAGCT--TCATTGTCG 176689 Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | ||||||||| ||| | ||||| |||||||||||||||||||| Sbjct 176688 TCGTAGTTGGACGAGGTGAGGAGGTGACCAAAGATGAGCTCGGGGAT 176642 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/277 (69%), Gaps = 22/277 (8%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGA---GAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAA 117360 ||||| ||||||||| ||| ||||||||||| || ||| |||| ||| |||||||| Sbjct 178671 GTGAAGATGTAACGACCCGAG---GCAGCATCCTTACCTCCAAGCAA-ACGAGTACCGAA 178616 Query 117361 TTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 ||| || || || || | ||||| | ||||||| |||||||||||| || || | Sbjct 178615 TTGGCCCCTGGGTTCAAGCAGGTTGACGTTGTTGCTGCCCACAAAGTTCTGCGCGAGACC 178556 Query 117421 GACAATCGTACCTTGGAGGCTC-GCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGT 117479 |||||||| | | | || | || ||||| ||||| || || | || || ||||| Sbjct 178555 TACAATCGT-CATGCTAAGCGCTGCTTCACCGTGGTGGTAGGCGGCTTGACCCAACACGT 178497 Query 117480 AGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGG-CA-----GG 117533 || | ||| ||||||| || || ||| ||||| || || | Sbjct 178496 TACCGACGAGCGTGTTGACCTTCAACTCGGA------GTTGCTCTTGCGGTCAAACATGA 178443 Query 117534 CATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||| || ||||| ||||||| ||||| |||||||| Sbjct 178442 CATACATGACCTTTCGCTGACCAGGCTTGAGACCATC 178406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547198865299000