Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3 298 6e-76 seq1972 176 5e-39 seq2311 170 2e-37 seq1866 154 2e-32 seq611 118 1e-21 seq2408 105 8e-18 >seq3 Length=70329 Score = 298 bits (330), Expect = 6e-76 Identities = 1142/1756 (65%), Gaps = 73/1756 (4%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||||||||||| | ||||||||||| ||||| ||||||||||| | |||||| || Sbjct 24210 GTTCGCAGATAGTACGTACCCGTCTTGAGTCCCTTTTTCCAGCCGTAAAAGTGCATCGAG 24151 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 |||||| ||| || || | | | ||||| || ||||| ||||| ||||| Sbjct 24150 GTGAGCTGTCCAAACGTCGGTGCCGAAAGGTGAATGTTGAGCGACTGCGACTGGCAGATA 24091 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || || || || || ||||| || || || | ||| || || ||||| || || Sbjct 24090 AACGCTCCTCGGTCCGCAGCCATGTCGATGATCGCCTTCTGGCTGATCTCCCAGACCGTC 24031 Query 80218 CGATACACCTTAC-GAAGCTCCTCTGGAATGTC---CAGATTTTGCACACTGCCACCGTC 80273 |||| ||| || || || |||||| | || || || | || |||| Sbjct 24030 TTGTACAGCTTCTTGATGCGG-TCAGGAATGCCTGGCACGTTCTGGATCGATCCGCCGTG 23972 Query 80274 CTTTACAATTTGATTTTTCAATTCAGACGT-CCAGACACCAAGCTTGTGCAGATCTTTCA 80332 | | || | || |||| | | ||| ||| | || ||| ||| || || Sbjct 23971 CGCGATGATACGGTTCTTCA-TCGTGTCGTTCCACAGGCCCTGCTCCACCAGCTCGCGCA 23913 Query 80333 CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTT 80391 | | ||| | || ||||| |||||||| || || ||| || | ||| Sbjct 23912 ACAACCACGGGTTCACCACCTGGAACTCACCCGCGAGCACACGCCG-AGAGTAGATGTTG 23854 Query 80392 GTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGC 80451 | || |||||||| || |||||| || ||||||||| ||| || |||||| Sbjct 23853 GACGTATAAGGCTCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGC 23794 Query 80452 ATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAA 80508 ||||| | | || ||| || || || || |||||||| ||| | ||| | || Sbjct 23793 ATCGGTGCCAGCAGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGC--- 23737 Query 80509 TCTGACCAAAAAT-CAACCCCAACGCTGTGACCCC--ACATGTCGTGCTGCAAGATGCCC 80565 || | ||| || || ||| |||||||| ||||||||| |||||| ||| Sbjct 23736 TCCGCCCAGTCCCACAGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCC 23677 Query 80566 TCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC 80625 | ||| || || || || ||| |||||||||| ||| | | || |||||||| ||| Sbjct 23676 TGCGAAGCGGGCGAGCCGGCGTACGTCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCAC 23617 Query 80626 GA---CTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 || |||| || || ||||| || ||| |||||||| | ||||| | || Sbjct 23616 GATCGCTCC---AGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGA 23560 Query 80683 GCCTGTGGGTCG--TCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 ||| | || || || |||| | ||||| ||||||||| | || || |||||||||| Sbjct 23559 GCC--TCGGCCGACTCAAACGCATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAA 23502 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAATTGGGTAA 80799 | ||||| ||||||| ||||| ||| |||| || | || | |||||| | || || Sbjct 23501 CACCGATCCCGATCGGACGGTGACGCATGTTGGACTTGCGC-GCCTCCTCGACCGGATAG 23443 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA-ACAACCCGTGTAACATCATGAAG 80858 ||||| | ||||||| ||||||||| | || | | || | ||| || || Sbjct 23442 TAGTTAATGTCGATGATCTTGTTCAGGTT-CTTGCAGATGGCCTTGGCAACGCTGTGCAG 23384 Query 80859 TTTCTGAAAGTCGAA----TTGGTTCCCCT---TC-ACAAATGCCGGAAGGCTCAGGGAC 80910 || ||||||| | ||||| | || || | || | || || | || Sbjct 23383 ACGCTTAAAGTCGTACGTCTTGGT--CACTGGGTCAATGAACGTGGGCAGTGCGATCGAG 23326 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 || || |||||||| |||||||| || | | | | |||||| ||| || || ||||| Sbjct 23325 GCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAG 23266 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || || |||| || || || ||||| |||||||| |||| |||| ||||||||| Sbjct 23265 TTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTG 23206 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090 || ||| | ||| | || |||||| |||||||| ||||||||||| ||| | || Sbjct 23205 TACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGGCGTACCAGAGCTTC 23146 Query 81091 CGCGCCTTGAC----CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTT 81145 |||| ||||| | | | | | | || |||||| | || |||| || Sbjct 23145 TGCGCTTTGACGGTGCGCTTCGAGCGA----CCCTCGGCCTCGTAGCGCTCGTAGAGGCG 23090 Query 81146 CGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 | || |||| | |||||| | || || | || | ||||||||||| |||||||| || Sbjct 23089 C-TCAAACTCGTCACCGTAGCAG-TCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 23032 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||||||| || | ||| || ||||||||| ||||| | |||||| || | Sbjct 23031 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAG 22972 Query 81265 AACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 || || || || ||| ||| ||||||| | || ||||| ||||| ||||| || || Sbjct 22971 AAGAGCTCACGCGCA-CGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 22913 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG------ 81377 | || ||||| |||||||| || | || | || | | || | |||| Sbjct 22912 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACC---GGGACGCTTGTT 22856 Query 81378 GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACC 81437 ||||||||||| |||||| || ||||| ||| || || || | ||| || | || || Sbjct 22855 GCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCC 22796 Query 81438 AT--CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGA 81493 | ||||| |||||| || || | || ||| || || | || | | || || Sbjct 22795 GTTGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATG--GA 22740 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 | || ||||||||||| | | ||| || ||| ||||| || | ||| || | Sbjct 22739 TGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGT 22680 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGC 81613 | || || ||||| || | |||||| || | ||| || || | ||| ||| Sbjct 22679 AGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGT 22620 Query 81614 TTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCA 81673 | ||||| ||||| || || || | ||||| | || || | ||||| | Sbjct 22619 GCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAA 22560 Query 81674 GGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCA 81733 ||| || || || || ||| || || | ||||| || |||| ||| || |||| Sbjct 22559 GGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCA 22500 Query 81734 TAAACATGTACTGGGG 81749 | | ||||| |||||| Sbjct 22499 TGAGCATGTGCTGGGG 22484 >seq1972 Length=278426 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || |||||||| || ||||| || || ||||| Sbjct 201996 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 202055 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || |||||||| || |||||||| || ||| Sbjct 202056 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 202115 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| |||| ||| || || | ||||| || Sbjct 202116 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 202175 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||||||||| | ||| | |||||||| || || Sbjct 202176 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGTCTTCGTGGAGG 202222 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||||| || |||||||| |||||||| || || ||||| Sbjct 201768 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 201827 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || ||||||||||| || |||||||| || ||| Sbjct 201828 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 201887 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| ||||| || | || || || | ||||| || Sbjct 201888 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 201947 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || ||||| || || ||||| || |||||||| Sbjct 201948 ATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACTCCGCGGTGG 201994 >seq2311 Length=83875 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || ||||| ||||| ||||| Sbjct 80313 ATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCTTCG 80372 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| ||||| || |||||| Sbjct 80373 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 80432 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| |||||||| | ||||| || | ||||| || Sbjct 80433 CAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTACAAC 80492 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | || | ||||| || ||||| Sbjct 80493 ATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 80539 >seq1866 Length=288946 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| ||||| |||||||| ||||| || | ||| | ||| | ||||| Sbjct 192436 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 192377 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||||||||||||||||| ||||| || ||||||||||| || || || || |||||| Sbjct 192376 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 192317 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| | ||||| || |||| |||||||| || || || Sbjct 192316 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 192257 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || || | ||||| || ||||| Sbjct 192256 CTTGTGCTCCGTCTGCGTGGTGG 192234 >seq611 Length=45555 Score = 118 bits (130), Expect = 1e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || ||||||||||| || || |||||||| ||||| Sbjct 45426 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCC 45485 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || |||||||||||||| || || || |||||| Sbjct 45486 GACACAATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAG 45545 Query 27526 CAGCGTCT 27533 |||||||| Sbjct 45546 CAGCGTCT 45553 >seq2408 Length=74372 Score = 105 bits (116), Expect = 8e-18 Identities = 130/176 (74%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||||| | || |||||| || || || || || || || || |||||| || | Sbjct 34434 AGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGA 34375 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| || || ||||| ||||| |||| || |||||||| |||| Sbjct 34374 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCT 34315 Query 64835 CTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGCCACCTCA 64888 | || |||||||| || ||| || ||||| | || || ||||||||||||| Sbjct 34314 CGCGTGACGAGGGTCTTCACACGGACTTTGCC--TGCCTTCTCTTCAGCCACCTCA 34261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570292542155600