Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2408 114 1e-20 >seq2408 Length=74372 Score = 114 bits (126), Expect = 1e-20 Identities = 289/433 (67%), Gaps = 10/433 (2%) Strand=Plus/Plus Query 4568 ACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||| ||||| | || | || || ||||| || ||||| | |||||||| | ||| | || Sbjct 34301 ACCCTCGTCAC-GCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACCGCGCT 34359 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || ||||| || || | ||| ||||| || || || || ||||| || |||||||||| Sbjct 34360 TCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 34419 Query 4687 ACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 |||| || | || |||| | || || ||||| | |||||| | |||||| Sbjct 34420 ACGCGACCAGACGCTCGGCGAAAGTGGCACGC-TTGTCGCTGATCCATCGAAGAGCCCAG 34478 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTT 4802 | || || | ||| ||| ||| || || | | |||| ||| | ||| || | Sbjct 34479 TCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACGCTGC 34538 Query 4803 TCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTT 4862 ||| || || | || |||||||| || || || || | || || || || || Sbjct 34539 TCA---GGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTTC 34595 Query 4863 TCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922 || || ||||| || ||||| ||||| | ||| || | | |||||||| || Sbjct 34596 TCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACTG 34655 Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982 || | || || | ||| ||||| || ||||| || || || || ||||| | ||| Sbjct 34656 AAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCACA 34715 Query 4983 TGAGATATAAAGT 4995 || || ||||||| Sbjct 34716 TGCGAGATAAAGT 34728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036562309165