Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1519 459 2e-124 seq1914 192 5e-44 seq1233 105 6e-18 seq909 91.5 1e-13 seq1738 89.7 5e-13 >seq1519 Length=103858 Score = 459 bits (508), Expect = 2e-124 Identities = 1244/1881 (66%), Gaps = 44/1881 (2%) Strand=Plus/Plus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 ||||| || || ||||| | ||||| ||||| || ||||| ||| | |||||||| || Sbjct 42711 GTAAATTGGATCGCGTTCGACGCCGGCTTGGTTCGCAGATAGTACGTACCCGTCTTGAGT 42770 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 ||| | ||||| ||||||| || ||||| || | | |||| | |||| | | Sbjct 42771 CCCTTTTTCCAGCCGTAAAAGTGCATCGAGGTGAGCTGTCCAAACGTCGGTGCCGAAAGG 42830 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATC 22294 | | |||| |||||| ||| ||||||||||||||| || || ||||| | | Sbjct 42831 TGAATGTTGAGCGACTGCGACTGGCAGATAAACGCTCCTCGGTCCGCAGCCATGT----C 42886 Query 22295 AATGTACGCATC--GAC--ATTTCCCATACGGTCTTGTACAGTTGCCTGAT-CTCTAACG 22349 ||| ||| | | | || ||||| || ||||||||||| | | |||| | | | | Sbjct 42887 GATGATCGCCTTCTGGCTGATCTCCCAGACCGTCTTGTACAGCTTCTTGATGCGGTCA-G 42945 Query 22350 GTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTAT 22409 | || | | |||||| || ||| | ||||| || || ||||| | Sbjct 42946 GAATGCCTGGCACGTTCTGGATCGATCCGCCGTGCGCGATGATACGGTTCTTCATCGTGT 43005 Query 22410 CGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG-TTCACCACTTGAAAC 22468 ||||||||| || | || || | || | |||| |||||||| || ||| Sbjct 43006 CGTTCCACAGGCCCTGCTCCACCAGCTCGCGCAACA-ACCACGGGTTCACCACCTGGAAC 43064 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || | | || || || ||| |||||||| || | || ||||| | || || Sbjct 43065 TCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGCTCGAAGCACTCGTTA 43124 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 ||||| |||||| |||||||||||||||||||| |||| ||| |||||||| | Sbjct 43125 AAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGCAGCAGCGAGTTGCGA 43184 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||||| | || || ||||||| || |||||||||||| || |||||||| Sbjct 43185 AGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCACAGGTCCGACGGCGTG 43244 Query 22649 ACATTGTCCCACATATCGTATTGCAA--CACGCCGCGACTCGCCGGGCTGCCTTCGTACG 22706 || ||||||| ||||| ||||| ||| | |||| || || ||| |||||| Sbjct 43245 AC---CCCCCACATGTCGTACTGCAACTCACCCTGCGA--AGCGGGCGAGCCGGCGTACG 43299 Query 22707 TTTCGTACGGACCATATATCGCGGCAAGTTCGCA-GCTCGCCTCCAACGCGCCGTAATAT 22765 | ||||| || | | | || || ||||| | ||| ||||| ||| ||| || Sbjct 43300 TCTCGTAGCTGCCGTGCTGCTCAGCCAGCTCGCACGATCG-CTCCAGTGCGGCGTGGTAG 43358 Query 22766 ATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GCGGCGACGCTTTCGTACGGCATA-C 22823 || ||||| ||||| | | |||| | ||| || || || | || || ||||| | Sbjct 43359 ATGGTCTCAAAGATCTGCACGTTC-AGTCGCCGAGCCTCGGCCGACTCAAAC-GCATACC 43416 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 ||| |||| |||||| ||||| | |||||||| || || |||||||| |||| || Sbjct 43417 CCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCCGATCGGACGGTGACGCA 43476 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 || ||| ||||| | ||||| | || ||||| | |||||| || Sbjct 43477 TGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTCGATGATCTTGTTCAGGT 43536 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-----CGA 22998 | || | || | | | |||||||| ||| | | Sbjct 43537 TCTTGCAGATGGCCTTGGCAACGCTGTGCAGACGCTTAAAGTCGT--ACGTCTTGGTCAC 43594 Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 | | ||| ||| || | ||||||||||| || ||||| || ||||||||||| Sbjct 43595 TGGGTCAATGAACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTC--G 43652 Query 23059 GGA-CG-TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTG 23116 ||| || ||||||| | || |||||||| | ||| ||||| |||||||| | || Sbjct 43653 GGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTC 43712 Query 23117 CTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCG 23176 |||||||||| || || ||| | |||||||| || ||| | || ||||||||||| Sbjct 43713 TTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCG 43772 Query 23177 ACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG 23236 ||| ||||||| ||| || ||| | |||| || | || ||| | | Sbjct 43773 GTCTGTGACTCGAGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGA 43832 Query 23237 CCTTCTTCCTCGTACTTTTGGTACA-ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAG 23295 || || ||||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| Sbjct 43833 CCCTCGGCCTCGTAGCGCTCGTAGAGGCGC-TCAAACTCGTCACCGTAGCAGTCGGCCAG 43891 Query 23296 GCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCAT 23355 || || | | | || |||||||| ||| || | || || | |||| Sbjct 43892 ACCAGGGCACTCGTTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCAT 43951 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || ||||| || | ||| || || ||||| || || || || ||||||||||| || || Sbjct 43952 GAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCC 44011 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 | |||||| || || | || || || ||||||| ||||| || || | ||||| Sbjct 44012 GTGGTTCTTGCGCAGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAAT 44071 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTA 23535 ||||| || || || | ||| ||||| ||||| |||||||| || || ||||||||| | Sbjct 44072 AGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAA 44131 Query 23536 CACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACC 23595 || | ||||| ||||| | |||||| | ||| ||| || | ||| || Sbjct 44132 GACGCGGAGCATGGGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC 44191 Query 23596 TTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 | | || | | || | || || || ||||| ||| ||| || || ||||| || Sbjct 44192 GGTGCCACGGATGCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGC 44251 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 || || || || ||||||||||| ||||| ||| || || | | || | ||| Sbjct 44252 ACAAGTCTTGAGGGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAA 44311 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 ||||| || | |||| | || ||| |||| ||| || || || |||||| || Sbjct 44312 GCACGACGAGAGCTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGT 44371 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 |||||| | |||||| || |||||||| ||||||||| || ||||||| ||||| Sbjct 44372 AAAGTACTTTTGCGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTG 44431 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTT 23892 || |||| ||||| ||||| | ||||| || || | || ||||| | |||||| Sbjct 44432 GATGCCGACAGCGACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTT---GCCGTT 44488 Query 23893 AATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTC 23952 || || || ||| ||||| | | ||| || || || ||| ||| |||| ||||| Sbjct 44489 GATGCGGAGCAAATAGGAACGCTCGAGCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTC 44548 Query 23953 ACGATCGTGCACTATGGCCGA 23973 ||| |||| | |||||||| Sbjct 44549 ACGTTCGTAGATGATGGCCGA 44569 >seq1914 Length=69059 Score = 192 bits (212), Expect = 5e-44 Identities = 562/855 (66%), Gaps = 47/855 (5%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||||| || || | ||||| Sbjct 34833 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34774 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || ||||| || ||| ||||| | || || || |||| | | ||||| Sbjct 34773 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGACAATGAGCGCCACTTTATCTCG 34714 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || ||| | ||||| ||||| || || |||||||| || |||||||| | || || | Sbjct 34713 CATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG- 34655 Query 57747 TTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 ||||| ||||| || | | ||||| | ||||| ||||| || || | | Sbjct 34654 -TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGA 34596 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | || ||| | || || || | || ||||| |||||||| || ||| | || | Sbjct 34595 TGGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGA----G 34540 Query 57865 AC-GAGAAACGTAGA---CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG--- 57917 | ||| | ||| | ||||| |||| |||| || || || | ||| |||| Sbjct 34539 CCTGAGCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGG---TCGTCAAGCAG 34483 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG---GCCACGTTCGCCGAGAGG 57974 ||||| || ||| | | |||||| | ||| || | ||||| ||||||||| | Sbjct 34482 AAGGCCGACTGGGCTCTTCGATGGATCA---GCGACAAGCGTGCCACTTTCGCCGAGCGT 34426 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || ||||||| ||||||||||| || || || || |||||| || || | || || Sbjct 34425 CTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTC 34366 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| ||||| || |||||||| || ||||| ||||||| | || ||||| Sbjct 34365 TGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 34306 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 ||||||||||| || || || ||||| ||||| | | | ||| ||| | | Sbjct 34305 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCTTCAGCCAC---CTCAGGA----G 34253 Query 58155 ACGCGGGATCGCA-------TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207 |||| | | || | | | || ||||| ||||| || | || || || | Sbjct 34252 GCGCGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCTGTGGAAATTGAGAAGGC 34193 Query 58208 GTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAA 58267 ||| | |||| | | || || || | |||||||||||| | | |||| | Sbjct 34192 GTTCCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCAAGCTCATGTGCCA 34133 Query 58268 GTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGC--GT-CATTA 58324 |||||||||| ||| ||||| | ||||| | | | | ||| | | || || || Sbjct 34132 ATACATTGAGTATGTCGCCGA---TCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACTA 34076 Query 58325 CAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTT 58384 | | | | | ||||||||| ||||||| || ||| | || |||||||| ||||| Sbjct 34075 CGGCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTT 34016 Query 58385 TTTCGaaaaaaaaGT 58399 || || ||||| || Sbjct 34015 CTTTGAGAAAAAGGT 34001 >seq1233 Length=330997 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || |||||||| || ||||| |||| || || | || Sbjct 128902 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 128843 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || || || ||| Sbjct 128842 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 128783 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| | ||||| | ||| || || || ||| Sbjct 128782 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 128723 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || ||||| |||||||| |||| ||| Sbjct 128722 ATTCAGAAGGAATCCACTCTTCACTTGGTCCTT 128690 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || ||||| || || || |||| || || | || Sbjct 129130 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129071 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || |||||||||||| | || || || ||| Sbjct 129070 GACACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 129011 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | |||||| || | ||| || ||| Sbjct 129010 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 128951 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| ||||| ||||| || || Sbjct 128950 ATTCAGAAAGAGTCGACGCTTCACCTTGT 128922 >seq909 Length=212 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31199 ATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGT 31258 || || || ||||||||||| ||||| ||||||||| | || || || | ||||||| Sbjct 212 ATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACA 153 Query 31259 GTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGT 31318 |||| | ||||| | || ||||||||| || | || || |||||||||||| Sbjct 152 ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGT 93 Query 31319 CTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAA 31378 || || || ||||| || ||| | |||||| || | || || ||||| || Sbjct 92 CTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAG 33 Query 31379 AAAGAATCGACTCTTCATCTGGT 31401 || || ||||| ||||| || || Sbjct 32 AAGGAGTCGACACTTCACCTTGT 10 >seq1738 Length=83600 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| || || || || || ||||| |||| || || | Sbjct 80032 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80091 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | ||||||||| Sbjct 80092 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80151 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||| || |||||||| || ||| | || ||| Sbjct 80152 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGAC 80190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755378425760