Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1233 118 1e-21 seq909 107 2e-18 seq1914 84.2 2e-11 >seq1233 Length=330997 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||||| ||| |||||||| |||||||| || ||| | || | | Sbjct 128916 CGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG 128975 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||||||||| |||||||| |||| ||||| |||||||| ||||| |||||||| ||| Sbjct 128976 TCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTG 129035 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||||| | || ||| || || | || | Sbjct 129036 TCTTGGATCTTGGCTTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATG 129095 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | ||| || || || || ||||| Sbjct 129096 GTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 129130 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || ||||||| || || || || |||||||| || || Sbjct 128675 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 128734 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||||||||| || || ||| |||| ||||| |||||||| ||||| Sbjct 128735 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 128794 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| | | ||| || Sbjct 128795 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 128854 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| || | ||| || || || || |||||| Sbjct 128855 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATA 128903 >seq909 Length=212 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||||| || ||||| || || ||||| || || | |||| | Sbjct 4 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 63 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| ||||||||| |||| ||||| ||||| || || || || || || ||| Sbjct 64 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 123 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | |||||||| | ||||||||||| ||| | | Sbjct 124 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 183 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATAT 139758 ||||||||||||| || || || || || Sbjct 184 GTCTTGCCGGTCAGAGTCTTGACAAAGAT 212 >seq1914 Length=69059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 52606 GCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGT 52665 |||||||| ||||| ||||||||||||||||| || || || | ||||| ||||| Sbjct 34443 GCCACTTTCGCCGAGCGTCTGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGC 34384 Query 52666 AGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAG 52724 || || | || || | |||| || | || | | |||||||| |||||||| Sbjct 34383 TCATTCGCCTCGATCTTCTGGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACGTTCTC 34325 Query 52725 CAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTG 52772 ||||||| | || ||||| ||||| || | ||||| || ||||| || Sbjct 34324 CAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACGGACTTTGCCTG 34277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496051734817600