Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1869 170 3e-38 >seq1869 Length=255805 Score = 170 bits (188), Expect = 3e-38 Identities = 186/246 (76%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 16447 CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCG 16506 ||||||| | ||||| |||||||| || ||||||||||| |||||||||||||| || || Sbjct 938 CAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTATCCGTCGTCTTGCGCG 996 Query 16507 TCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 ||| ||||| ||||||||| ||||||| | |||| || |||| |||| |||| |||| Sbjct 997 TCGAGGTGGTGTCAAGCGTATCTCTGGTCTTATCTACGACGAGACCCGTGGTGTTCTGAA 1056 Query 16567 GATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAA 16626 | |||||||| || | || || | ||| | || ||| || |||||||| || || || Sbjct 1057 GCTCTTCCTCGAGTCGGTGATTCGTGACTCGGTCACCTACACTGAGCACGCCAAGCGCAA 1116 Query 16627 GACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGG 16686 ||| |||||||| | || | || || ||| | || || || ||||| | | || || Sbjct 1117 GACCGTCACCTCGCTCGACGTTGTTTACGCACTCAAGCGCCAGGGCCGCACCCTGTACGG 1176 Query 16687 TTTTGG 16692 ||| || Sbjct 1177 TTTCGG 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073391500754