Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1519 127 3e-24 seq1914 114 2e-20 >seq1519 Length=103858 Score = 127 bits (140), Expect = 3e-24 Identities = 468/730 (64%), Gaps = 10/730 (1%) Strand=Plus/Plus Query 63135 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 63194 || || |||||||| || | | | ||| ||||| || || | || ||||| | | Sbjct 43860 CGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGC 43919 Query 63195 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 ||||| || |||| | || || | ||||| ||||||||||| | ||| || || ||| Sbjct 43920 GACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGC-ATA 43978 Query 63255 -AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 || || || | | | ||||| ||||| ||||| || ||||||||| | Sbjct 43979 GAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTC 44038 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | | || || ||||| ||||| | ||| || || | | || || || ||||| || Sbjct 44039 AAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCC 44098 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 ||||| || | ||| | || ||||| || | || | | ||| || | ||| ||||| Sbjct 44099 ACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTT 44158 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-- 63491 | ||| ||||| |||| || || || || |||| || ||| ||| Sbjct 44159 GCTGACACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGC----AATGGATGT 44214 Query 63492 --AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 || || || || || ||| | || ||||| | || || || | || || |||| Sbjct 44215 TGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAGGGTATCGTAGA 44274 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 | || || || ||||| ||||| ||| || || || || | || | | Sbjct 44275 TGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCG 44334 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 || || || || || | ||||| || ||||| ||||| | |||| || | || | Sbjct 44335 GGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGT 44394 Query 63670 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63729 |||||||||| || || || || ||| || || || || ||||| ||||| | Sbjct 44395 TGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGA 44454 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 ||||||||| || | || ||| |||| ||| || | ||| ||||| || | Sbjct 44455 GCATGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGA 44514 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 63849 || || || || ||| ||||||| ||||| |||||||| || || |||||| || Sbjct 44515 GCGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCACGTTCGTAGATGATGGCCGAGTCGA 44574 Query 63850 GTTTATCCTT 63859 | | ||||| Sbjct 44575 GCTGGTCCTT 44584 >seq1914 Length=69059 Score = 114 bits (126), Expect = 2e-20 Identities = 354/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| ||||||||||| | || || |||||||| |||||||| |||||||| || || Sbjct 34291 GTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAGACCGGGCATGAGACC 34350 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||| || ||||| || || || |||||||| || || || ||||| || || || || Sbjct 34351 GCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAAGATGCCCTCGACGGC 34410 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCACTTTTGAGC 33494 ||||| || | || | ||| | || ||| | |||| ||||| |||| Sbjct 34411 GGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCTGATCCATCGAAGAGC 34470 Query 33495 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33554 ||| |||||||||| || || || || || || | ||| | ||| ||||| | Sbjct 34471 CCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGTCAAACAGATATTCACG 34530 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | | | || | ||||| ||||| | || || | ||||| || ||||| Sbjct 34531 CTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGTAGGTCTCCGAGTGGATGTT 34590 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || || ||||| || |||||||| || | |||||||| ||| ||||| | || Sbjct 34591 CTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGGCGGCCTGAACTTCCGAACT 34650 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 || || || | | || || || || || || || || || || ||||| | || Sbjct 34651 GAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACGCAGCGAAGAACGCAAGCAC 34710 Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT---CCAATCATTGATATCTT 33790 ||| ||||| | || | || ||| || || || ||| || | || || | Sbjct 34711 ATGCGAGATAAAGTGGCGCTCAT-TGTCGTTCAGCTTGTTGTCCCAGTCGTGGAGGTCCT 34769 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | || | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 34770 TGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 34829 Query 33851 AGAT 33854 | || Sbjct 34830 AAAT 34833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931797630480