Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1519 250 2e-61 seq1914 138 1e-27 seq1233 116 3e-21 seq1738 113 4e-20 seq335 98.7 9e-16 seq909 89.7 5e-13 >seq1519 Length=103858 Score = 250 bits (276), Expect = 2e-61 Identities = 992/1522 (65%), Gaps = 67/1522 (4%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||| ||||| || || | |||||| || | || | ||| ||||| | || Sbjct 43050 TTCACCACCTGGAACTCACCCGCGAGCACACGCCGAGAGTAGATGTTGGACGTATAAGGC 43109 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||||||| ||||||||| ||| |||| ||||| ||||| |||| | Sbjct 43110 TCGAAGCACTCGTTAAAGCCCAGGATCTGACTCGTCGAAGCGGTCGGCATCGGTGCCAGC 43169 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| || |||||||| ||| | |||| ||| |||| ||||| Sbjct 43170 AGCAGCGAGTTGCGAAGCCCGTGCTTGGCGATCTTGGCCTTGAGCTCCGCCCAGTCCCAC 43229 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC----GCTGGCGGG 145293 || | |||| | || ||||||||||||||||||| |||| || |||| | Sbjct 43230 AGGTCCGACGGCGTGACCCCCCACATGTCGTACTGCAACTCACCCTGCGAAGCGGGCGAG 43289 Query 145294 GCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG----GCGAGCTCGCAAC-TCGCC 145348 | || | | | ||| ||||| || || || |||||||| |||| Sbjct 43290 CCGGCGT----ACGTCTCGTAGCTGCC----GTGCTGCTCAGCCAGCTCGCACGATCGC- 43340 Query 145349 TCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCG 145408 ||||| ||| || || || ||||| || ||| ||| || || || || | Sbjct 43341 TCCAGTGCGGCGTGGTAGATGGTCTCAAAGATCTGCACGTTCAGTCGCCGAGCCTCGGCC 43400 Query 145409 CTCTCGTACGGCATGCGC-AGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| ||| ||| | | | | | || ||||| || || ||||| | || | || Sbjct 43401 GACTCAAACG-CATACCCCATGATCATGAACGCATCCGCAAGGCCCTGAACACCGATCCC 43459 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTC 145527 ||| || || || ||||||| | | | |||| ||||| ||||| ||| ||| Sbjct 43460 GATCGGACGGTGACGCATGTTGGACTTGCGCGCCTCCTCGACCGGATAGTAGTTAATGTC 43519 Query 145528 GATAATTTTATTCAAGTT-TCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTTCAA 145583 ||| || || |||| ||| | ||| | |||| | || ||||| | ||| || Sbjct 43520 GATGATCTTGTTCAGGTTCTTGCAG-ATGGCCTTGGCAACGCTGTGCAGACGCTT---AA 43575 Query 145584 AGTCAAACCGA---GCCTC---GTCAACGACCACACAGCTATTGACGGCGATCGACGCCA 145637 |||| || | | | ||||| || || | | || ||||||| || | Sbjct 43576 AGTCGTACGTCTTGGTCACTGGGTCAATGA--ACGTGGGCAGTG----CGATCGAGGCGA 43629 Query 145638 AATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGC 145697 || || |||||| ||| |||| ||||||| | | |||||||| ||||| ||| Sbjct 43630 GGTTGCACACTGCCACCTCGTCGGGAGCGCTGTACTCGATGATCTCGGTACACAAGTTGG 43689 Query 145698 TACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGA 145757 || ||||| || || || || | ||| || || || | |||| ||||||||||| | Sbjct 43690 AGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACA 43749 Query 145758 GCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTG 145815 | ||| | || ||| ||||| ||| | ||| | ||| || || || | ||| Sbjct 43750 GGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCGAGGATGG--CGTACCAGAGCTTCTG 43807 Query 145816 CGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAA 145874 ||| || ||| ||| |||| ||||| | ||||| | |||||| ||||| Sbjct 43808 CGCTTTGACGGTGC-GCTTCGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAA 43866 Query 145875 ACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATA 145934 || || ||||||||| |||| ||| || || |||| |||||| ||||| |||||||| Sbjct 43867 ACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCGTTGGGGCACATGAGCGACCAGT 43926 Query 145935 CGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGT 145994 ||||||| | ||| | || ||| || | ||| |||||||| || || || | | | Sbjct 43927 CGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGCACCCAGAGTGCATAGAAGAGCT 43986 Query 145995 CGCGCGCTTTGCAA-TCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGA 146051 | ||||| ||| ||||| || ||| | || || | || | ||| | ||| Sbjct 43987 CACGCGCAC-GCACCTCCTCCTTTCCGTGGTTCTTGCG-CAGGTCGAGGA-ACTCAAAGA 44043 Query 146052 TGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCT 146108 ||||| |||||| |||||||| || | || | ||| || || ||| ||||||| Sbjct 44044 CGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCGGGACGCTTGTTGCCACCCT 44103 Query 146109 GGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTA 146168 |||| |||| || | ||||||| |||||||| | ||||||| | | |||| || | Sbjct 44104 GGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATGGGCACAATGCCGTTGCTGA 44163 Query 146169 CGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGA 146228 | ||||| || | || | |||| | || | |||||| | || | ||||| Sbjct 44164 CACCGTTGGTGCCGGCAATGTACGAGCCGGTGCCACGGATGCAATGGATGTTGAGGCCGA 44223 Query 146229 GACCGCCG-CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTC 146286 || ||| |||| |||||| || ||| || ||| ||| || |||||||||||||| Sbjct 44224 TGCCACCGGCCGT-CTTGGAGATCATGGCACAAGTCTT-GAGGGTATCGTAGATGCCGTC 44281 Query 146287 AAT---GCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGT 146343 || | ||| |||| ||| | || |||||||| | | ||||| ||| || Sbjct 44282 GATCGAGTCATC-CTTC--ATGGTAACAAGGAAGCACGACGAGAGCTGCGGGTGCGGGGT 44338 Query 146344 CCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATA 146403 || || ||| | ||| || ||||| ||||| ||| | ||| | || Sbjct 44339 ACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTGCGACATAAGGTTGTA 44398 Query 146404 CGTTTCGATAGCG-TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCA 146462 ||| ||||| ||| ||| || |||| | ||| || ||||| | |||||| |||||||||| Sbjct 44399 CGTCTCGATGGCGCTCTCGA-TGTCCTGGCCGTGGATGCCGACAGCGACTCGCATGAGCA 44457 Query 146463 TGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGG 146522 |||| ||||| ||||| || || | || || | ||||||| ||| || | Sbjct 44458 TGTGCTGGGGACGCTCTGCGACCTTGCCGTTGATGCGGAGCAAATAGGAACGCTCGAGCG 44517 Query 146523 TTTTGTATCCGAAAAATTTGTA 146544 | ||| | |||||||| ||||| Sbjct 44518 TCTTGAAGCCGAAAAAGTTGTA 44539 >seq1914 Length=69059 Score = 138 bits (152), Expect = 1e-27 Identities = 330/488 (68%), Gaps = 17/488 (3%) Strand=Plus/Minus Query 46100 AGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTA 46159 |||| |||||||||| | ||||||| | || || ||||||||||||||| Sbjct 34484 AGAAGGCCGACTGGGCTCTTCGATGGATCAGCGACAAGCGTGCCACTTTCGCCGAGCGTC 34425 Query 46160 TGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTT 46219 |||| || ||||| || |||||| ||||||| || ||| || ||| | ||||| | Sbjct 34424 TGGTCGCGTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCT 34365 Query 46220 ACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 |||| || | || | |||||||||| || ||||| ||||||||| || ||||| Sbjct 34364 GGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGT 34306 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCACGACAAG 46338 |||||||| || || ||||||||||| || || || || | | | || || | Sbjct 34305 GACGAGGGTCTTCACACGGACTTTGCCTGCCTTCTCT---TCAGCCACCT-CAGGAGGCG 34250 Query 46339 CTTGCGCCC-GACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTT 46397 | || ||| ||||| ||||| | || ||| ||||| |||| |||||||||| ||| Sbjct 34249 CGCGCACCCAGACACGGTGCTCAAGATCATCACTGAGGCTGTGGAAATTGAGAAGGCGTT 34190 Query 46398 TTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAAC-GCACAGTCAATGTGCGACT 46456 | | || | |||| || || | || |||||| ||| || |||||| | | Sbjct 34189 CCTGTGCGAATCAATCCCCGTCGCGCTCATCGGTATGAACAGCA-AGCTCATGTGCCAAT 34131 Query 46457 ACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACG 46516 |||| |||| ||| || || || |||| || ||| | || ||| | ||| Sbjct 34130 ACATTGAGTATGTCGCCGATCGCTTGCTGGTATCGCTCGGAAACCCAGTGCACT---ACG 34074 Query 46517 CGCGCAA----TCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTT 46572 || | | ||| ||||| ||||||| |||||| || |||| ||||| || || || Sbjct 34073 -GCTCCACATGTCCGTTTGACTTTATGACCAACATTTCGTTGGAAGGCAAGACCAACTTC 34015 Query 46573 TTCGAAAA 46580 || || || Sbjct 34014 TTTGAGAA 34007 >seq1233 Length=330997 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | |||| ||| | || | |||||||| || ||||||||||| ||| Sbjct 128904 CCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 128963 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || |||||||| || ||| |||| | ||||||||| || ||||| Sbjct 128964 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 129023 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || |||| | || | || || | |||||||| Sbjct 129024 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 129083 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || || || || || || || ||||||||||| Sbjct 129084 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 129130 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || || || | || || ||||| ||||||||||| || Sbjct 128675 GCCTCCACGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGA 128734 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| || |||| | ||||||||| || ||||| Sbjct 128735 CAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGG 128794 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || | ||||||| Sbjct 128795 AATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 128854 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || || || || || |||||||| Sbjct 128855 TTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 128902 >seq1738 Length=83600 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| || Sbjct 80261 CCACCACGCAGACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAA 80202 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 80201 AGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGA 80142 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 80141 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACC 80082 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| ||||| || || || || || || |||||||| Sbjct 80081 TCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCAT 80035 >seq335 Length=223780 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | |||||| ||||| || |||||||| || Sbjct 31651 CCACCACGCAGACGGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAG 31592 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 31591 AGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 31532 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | |||||| | Sbjct 31531 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACC 31472 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||||| ||| ||||| ||| Sbjct 31471 TCAAGGGTAATGGTCTTACCTGTT 31448 >seq909 Length=212 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||| ||| | || | ||||||||||| || |||||||| || | ||||| | Sbjct 4 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 63 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || || |||| | |||||||||||| || ||||| || || ||| Sbjct 64 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 123 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || |||| ||||| | || | ||| | Sbjct 124 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 183 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAAT 131228 || || ||||| ||||| || || || || Sbjct 184 GTCTTGCCGGTCAGAGTCTTGACAAAGAT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001129483520