Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1233 131 1e-25 seq335 122 7e-23 seq909 109 5e-19 seq1738 105 6e-18 >seq1233 Length=330997 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| ||||||||||| || | || || || || | ||||| ||||| || || Sbjct 129132 AGATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCT 129073 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| | ||||| || || ||||||||||| || ||||| || |||| Sbjct 129072 CGGACACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATC 129013 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| || || || || || ||| | || || ||| || ||||||| |||| Sbjct 129012 AGCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACA 128953 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| ||||| || || | || | || |||||| | ||||| ||| Sbjct 128952 ACATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACTCCGCGGTGGT 128903 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || ||||||| ||||| || | | Sbjct 128902 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 128843 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||||||||| || ||||| || ||||| Sbjct 128842 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 128783 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||||||||| ||| | || ||| ||||| | || || |||||| Sbjct 128782 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 128723 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || |||||||| Sbjct 128722 ATTCAGAAGGAATCCAC 128706 >seq335 Length=223780 Score = 122 bits (134), Expect = 7e-23 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301 ||| ||||| || | || ||||| ||||| || | || ||| | ||| || |||| Sbjct 31448 AACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGC 31507 Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 || ||||| ||||||||||||||||| ||||| || || || || || || ||||| || Sbjct 31508 CAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 31567 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| ||||||| |||| || |||||||| || || ||||| ||| Sbjct 31568 GCAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACC 31622 >seq909 Length=212 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 || ||||| || ||| | ||||| || ||| |||| ||||| ||||| | |||| || Sbjct 212 ATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACA 153 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | ||| || |||| || || || |||||||||||||| || || || || || ||| Sbjct 152 ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGT 93 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 || || ||||| || || ||| | || || |||||| |||| || |||||||| || Sbjct 92 CTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAG 33 Query 22405 AAAGAATCCACCATACATTTAGTTTTGCGA 22434 || || || || | || | || |||||| Sbjct 32 AAGGAGTCGACACTTCACCTTGTGTTGCGA 3 >seq1738 Length=83600 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | || ||||| || ||||||| || ||||| | Sbjct 80032 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80091 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| || |||| || || || ||||||||||| ||||| ||||| Sbjct 80092 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80151 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || || || ||| | ||||| || || | || || ||| Sbjct 80152 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTAC 80211 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | || || || | || |||| || ||| Sbjct 80212 AACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGGT 80262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717881669570