Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1233 140 8e-28 seq909 122 2e-22 seq1738 105 2e-17 >seq1233 Length=330997 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||||| | || || |||| ||| ||||| || || || ||||||| | Sbjct 128904 CCACCGCGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAG 128963 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || |||||||| | || || || |||||||| |||||||| ||| | || Sbjct 128964 AGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGA 129023 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || ||||| ||||| || || | || || || ||| Sbjct 129024 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATGGTGTCCGAGGACTCGACT 129083 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| || || || ||||| || || |||||||| Sbjct 129084 TCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 129130 >seq909 Length=212 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||||||| |||||||| | || || || || ||| Sbjct 28 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCTTCAAGCTGCTTACCAGCAAAG 87 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||| || || || |||||||| || || || || || Sbjct 88 ATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 147 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || || ||||||||||| ||||||||||||||||| Sbjct 148 TCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGTCAGAGTCTTGACA 207 Query 288463 AATAT 288467 || || Sbjct 208 AAGAT 212 >seq1738 Length=83600 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||||| |||||||| || | || || || |||||| Sbjct 80225 TCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTCGAGCTGCTTACCAGCGAAG 80166 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || || || || || || |||||||| || || || || || Sbjct 80165 ATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 80106 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| ||||| ||||| || || || |||||||| Sbjct 80105 TCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTCTTACCCGTGAGGGTCTTGACA 80046 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 80045 AAGATCTGCAT 80035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179624503871084