Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1738 129 6e-25 seq1233 113 5e-20 seq909 107 2e-18 >seq1738 Length=83600 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| || |||||| || || ||||| || | || || || | Sbjct 80250 ACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCC 80191 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||||||||||||||| || || ||||||||||||| || | || |||||| Sbjct 80190 GTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTT 80131 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| || |||| | | | ||||| || ||||| |||| ||||| Sbjct 80130 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGAT 80071 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| || ||||| || ||||| |||||||| ||||| || Sbjct 80070 GGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTT 80032 >seq1233 Length=330997 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||| | || | || ||| || ||||| ||||| || | || || || || Sbjct 128916 CGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG 128975 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||||||||||||||| ||||| |||||||| || | || | || |||||| Sbjct 128976 TCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTG 129035 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| || ||||| ||| | | | ||||| || || || |||| || || Sbjct 129036 TCTTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAAT 129094 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| |||||||| |||||||| ||||| || ||||| Sbjct 129095 GGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 129130 >seq909 Length=212 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||| | || | ||| |||||| || || ||||| || | || || || || Sbjct 4 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 63 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||||||||| || ||||| ||||||||||| | || | | ||||||| Sbjct 64 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 123 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | |||||| || ||||| || | ||||| Sbjct 124 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 183 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGAT 42202 || ||||| || || ||||| |||||||| Sbjct 184 GTCTTGCCGGTCAGAGTCTTGACAAAGAT 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199369063520