Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1519 334 8e-87 >seq1519 Length=103858 Score = 334 bits (370), Expect = 8e-87 Identities = 1085/1663 (65%), Gaps = 44/1663 (3%) Strand=Plus/Minus Query 93772 GGCAGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGC 93831 |||| ||| | ||||| || || || |||| ||||| ||||| |||| || |||||| Sbjct 44485 GGCAAGGTCGCAGAGCGTCCCCAGCACATGCTCATGCGAGTCGCTGTCGGCATCCACGGC 44426 Query 93832 CACGACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG 93891 || ||||| || | | | | | || ||| | | ||| | |||| Sbjct 44425 CAGGACATCGAGAGCGCCATCGAGACGTACAACCTTATGTCGCAAAAGTACTTTACCCAC 44366 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || || |||||||| || |||||| || ||| | || ||||| ||||| Sbjct 44365 GCCTCGCCTACGCTCTTCAACGCCGGTACCCCGCACCCGCAGCTCTCGTCGTGCTTCCTT 44306 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| ||||| ||| ||| || | ||| | ||||||| ||||| | Sbjct 44305 GTTACCATGAAGGATGACTCGATCGACGGCATCTACGATACCCTCAAGACTTGTGCCATG 44246 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || ||||| ||| |||| | | |||| || || || Sbjct 44245 ATCTCCAAGACGGCCGGTGGCATCGGCCTCAACATCCATTGCATCCGTGGCACCGGCTCG 44186 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| ||||| || | ||||||| | || || |||||||| ||||||||| Sbjct 44185 TACATTGCCGGCACCAACGGTGTCAGCAACGGCATTGTGCCCATGCTCCGCGTCTTCAAC 44126 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | ||||||||||| ||||||||||| | | | ||| | || || | || Sbjct 44125 AACACTGCGCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCTATTTAC 44066 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | || || |||||| ||||||| | ||| |||||||||| ||||||||||| || Sbjct 44065 ATTGAACCATGGCACTCGGACGTCTTTGAGTTCCTCGACCTGCGCAAGAACCACGGAAAG 44006 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | || |||||||| || ||||||||||| || || || ||||| Sbjct 44005 GAGGAGGTGCGTGCGCGTGAGCTCTTCTATGCACTCTGGGTGCCTGATCTCTTCATGAAG 43946 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | |||||| | ||| || |||| || | || ||||| || || || || ||| || Sbjct 43945 AGGGTCGAGCAGAACGGCGACTGGTCGCTCATGTGCCCCAACGAGTGCCCTGGTCTGGCC 43886 Query 94372 GACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-----C 94425 ||| | || | || ||||| | | || | || ||||| | |||| | Sbjct 43885 GACTGCTACGG-TGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGCTC 43827 Query 94426 AAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 | || | | || | | || |||||| ||| | ||| | || |||| Sbjct 43826 GAAGC--GCACCGTCA---AAGCGCAGAAGCTCTGGTACGCCATCCTCGAGTCACAGACC 43772 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 |||||||| | || | |||| ||| ||||||| | | |||| |||| ||||||| || Sbjct 43771 GAGACGGGCAACCCTTTCATCCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAG 43712 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 ||||||| ||||||| |||| || |||| |||||||| ||||||| | |||| Sbjct 43711 AACCTCGGCACGATCAAGTGCTCCAACTTGTGTACCGAGATCATCGAGTACAGCGCTCCC 43652 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 |||||| | || ||||| ||||| | ||| ||| ||| |||| ||| | || Sbjct 43651 GACGAGGTGGCAGTGTGCAACCTCGCCTCGATCGCACTGCCCACGTTCAT------TG-- 43600 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG-CGGGAAGG--ATG 94722 || | || ||| ||| || | ||| | || || || | |||| || Sbjct 43599 -ACCCAGTGACCAAGACGTACGA-CTTTA--AGCGTCTGCACAGCGTTGCCAAGGCCATC 43544 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 | ||||||||||| | | ||||||| |||| ||| || ||| ||||||| || Sbjct 43543 TGCAAGAACCTGAACAAGATCATCGACATTAACTACTATCCGGTCGAGGAGGCGCGCAAG 43484 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || || ||||| ||||| || ||||| | ||||| ||| | || Sbjct 43483 TCCAACATGCGTCACCGTCCGATCGGGATCGGTGTTCAGGGCCTTGCGGATGCGTTCATG 43424 Query 94843 ATGAT-GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901 || || | || || | | || || | ||| || | | |||| || | || || || Sbjct 43423 ATCATGGGGTATG-CGTTTGAGTCGGCCGAGGCTCGGCGACTGAACGTGCAGATCTTTGA 43365 Query 94902 AAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATC-GGACGGCGGGC 94960 | ||| || ||| || || | | ||| | | ||| | || | | ||||| | Sbjct 43364 GACCATCTACCACGCCGCACTGGAGCGATCGTGCGAGCTGG-CTGAGCAGCACGGCAG-- 43308 Query 94961 CACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTG 95018 |||| ||| | ||| ||||| ||| | ||||| || |||| |||| | || Sbjct 43307 -CTACGAGACGTACGCCGGCTCGCCCGCTTCG--CAGGGTGAGTTGCAGTACGACATGTG 43251 Query 95019 GGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTATCAAA 95076 ||| || | ||| |||| |||| |||||| | ||||| | || || | ||| Sbjct 43250 GGGGGTCACGCCGTCGGACCTGTGGGACTGGGCGGAGCTCAAGGCCAAGA--TCGCCAAG 43193 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| | ||| ||||||| |||| || ||||| || || || ||| |||||| Sbjct 43192 CACGGGCTTCGCAACTCGCTGCTGCTGGCACCGATGCCGACCGCTTCGACGAGTCAGATC 43133 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||| ||||||| ||||| || | || |||||| | ||| |||| |||||| Sbjct 43132 CTGGGCTTTAACGAGTGCTTCGAGCCTTATACGTCCAACATCTACTCTCGGCGTGTGCTC 43073 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || |||| || | ||| | | | || || ||| | | ||| || Sbjct 43072 GCGGGTGAGTTCCAGGTGGTGAACCCGTGGTTGTTGCGCGAGCTGGTGGAGCAGGGCCTG 43013 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCC 95315 ||| |||| | | ||||||| | | ||||| | ||| || |||||||| | || Sbjct 43012 TGGAACGACACGATGAAGAACCGTAT-CATCGCGCACGGCGGATCGATCCAGAACGTGCC 42954 Query 95316 GCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 || || || ||||||| ||| |||||||| || ||||||||| ||| | Sbjct 42953 AGGCATTCCTGACCGCATCAAGAAGCTGTACAAGACGGTCTGGGAGATCAGCCAGAAGGC 42894 Query 95376 GATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 ||| ||||| || || | ||| || | || ||||||||| Sbjct 42893 GATCATCGACATGGCTGCGGACCGAGGAGCGTTTATCTGCCAG 42851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494710967968880