Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1233 132 1e-25 seq909 122 2e-22 seq1738 120 7e-22 seq1236 114 3e-20 seq335 114 3e-20 >seq1233 Length=330997 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| ||||| || ||||| || | ||||||||| | || ||| Sbjct 128682 CGAAGACGAAGGACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTG 128741 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| ||||| ||||| ||||||||||| || ||| ||| ||| Sbjct 128742 CGACCATCTTCGAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCT 128801 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| |||| |||||| | | || || || | Sbjct 128802 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACTTCGAGA 128861 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || ||||| || || Sbjct 128862 GTGATGGTCTTGCCTGTGAGCGTCTTGACAAAGATCTG 128899 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| || |||||||| || |||||||| || || | ||||||||| | | || Sbjct 128910 CGGAGTCGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTT 128969 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| |||||||| || |||||||||||||||||||| || ||| ||| ||| Sbjct 128970 CGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCT 129029 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || ||| |||| |||||| | | || || || | Sbjct 129030 TCCTTGTCTTGGATCTTGGCTTTGACGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGA 129089 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| || || |||||||| || Sbjct 129090 GTAATGGTCTTGCCCGTGAGCGTCTTAACAAAAATCTG 129127 >seq909 Length=212 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || |||||||| || ||||||||||| |||| ||||||||| | | || | Sbjct 1 AGTCGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 60 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| |||||||| || || |||||||||||||||||||| || || || || Sbjct 61 CCGTCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCC 120 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||| || |||| ||||| | | || || || | ||| Sbjct 121 TTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTG 180 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 |||||||| || || ||||| || ||||| || Sbjct 181 ATCGTCTTGCCGGTCAGAGTCTTGACAAAGAT 212 >seq1738 Length=83600 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | | || | ||| || Sbjct 80246 AGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCC 80187 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| |||||||||||||| || ||| || || ||| Sbjct 80186 TCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCC 80127 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 80126 TGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGTC 80067 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || ||||| || || Sbjct 80066 TTACCCGTGAGGGTCTTGACAAAGATCTG 80038 >seq1236 Length=3301 Score = 114 bits (126), Expect = 3e-20 Identities = 131/170 (77%), Gaps = 16/170 (9%) Strand=Plus/Minus Query 43091 CCTTTTAGTCTCTGAACCTTTT-CTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATC 43148 || ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| Sbjct 851 CCATTTAGTCTCTGAACCTTCCACTTCTTGCGAAGAGGCTTGGCTGCGGATTGTCCAATC 792 Query 43149 CTCAACATTTTTACCATACCC-ACGCCATTACGCT--TGGTGCA-----ACTCTTTCGA- 43199 | | |||||||||||||| | ||||||| || || |||| | ||| ||| Sbjct 791 TCTAGCGTTTTTACCATACCCGAGGCCATTAACCTGGTGCTGCACCCCTAATCTCACGAT 732 Query 43200 ---GAAGCGGTAGTTGAGGCTCTAAGGAGTTTCCCGCAATTTGAGGATGT 43246 | ||||||| | |||||||||||||||||||||||| |||||| Sbjct 731 GGGGCCGCGGTAGCTAGAGCTCTAAGGAGTTTCCCGCAATTT--GGATGT 684 >seq335 Length=223780 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| ||||| ||||| |||| ||||||||| | | || | ||||| Sbjct 31636 AGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 31577 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||||||||| || ||| || || ||| Sbjct 31576 TCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 31517 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| |||||| | | || || || | || || ||| Sbjct 31516 TGAATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTC 31457 Query 199598 TTACCCGT 199605 ||||| || Sbjct 31456 TTACCTGT 31449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178891722442526