Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1738 145 9e-30 seq909 120 3e-22 seq1233 114 1e-20 seq335 100 3e-16 >seq1738 Length=83600 Score = 145 bits (160), Expect = 9e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| ||| |||||| ||||| |||||||| || || || || | Sbjct 80250 ACGAAGCACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCC 80191 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||||||||| || ||||| |||| ||||||||||||| ||| | || |||||| Sbjct 80190 GTCCTCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTT 80131 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | ||||| || ||||| || | ||||| Sbjct 80130 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGAT 80071 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||| || ||||| || || || |||||||| ||||| ||| Sbjct 80070 GGTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTTG 80031 >seq909 Length=212 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||| || || | ||| |||||| ||||| |||||||| || || ||||| || Sbjct 4 CGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCG 63 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || || || || | ||||||||||| | || | | ||||||| Sbjct 64 TCTTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 123 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | |||||| || ||||| || | ||||| Sbjct 124 TCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATC 183 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGAT 46587 || ||||| ||||| || || |||||||| Sbjct 184 GTCTTGCCGGTCAGAGTCTTGACAAAGAT 212 >seq1233 Length=330997 Score = 114 bits (126), Expect = 1e-20 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| || |||||||| | || ||||||||||||||||| || Sbjct 128712 TCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAG 128771 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | || |||||||| |||||| ||||| ||| Sbjct 128772 ATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTT 128830 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || || | |||||||| ||||| || ||||| || || Sbjct 128831 GTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGTCTTGCCTGTGAGCGTCTTGAC 128890 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 128891 AAAGATCTGCAT 128902 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||||||| || || | || ||| || || || ||||||||||| || || || || Sbjct 128916 CGCAACACAAGGTGAAGCGTCGACTCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCG 128975 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| || ||||| || | |||||||| || | || | || |||||| Sbjct 128976 TCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTG 129035 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| |||| ||| | | | ||||| || || || || | || || Sbjct 129036 TCTTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACTTCGAGAGTAAT 129094 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| ||||| |||||||| || ||||| Sbjct 129095 GGTCTTGCCCGTGAGCGTCTTAACAAAAATCTGCAT 129130 >seq335 Length=223780 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || ||||| | || ||||||||||| |||||||| Sbjct 31615 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTACCGGCGAAG 31556 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| |||||||||||||| || | | |||||||||| ||||| ||||| Sbjct 31555 ATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGA 31501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224424480560