Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1914 327 1e-84 seq1233 125 7e-24 seq1738 122 9e-23 seq335 105 7e-18 seq909 98.7 1e-15 >seq1914 Length=69059 Score = 327 bits (362), Expect = 1e-84 Identities = 406/553 (73%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| |||||||| || | |||||||| | || ||||| |||||| ||| || | Sbjct 34276 GCAGGCAAAGTCCGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAACGTGAG 34335 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| ||||| || |||||||| || || | |||||| |||||| || || Sbjct 34336 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATCGAGGCGAATGAGCCCGAGAAAAA 34395 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||||||||| || || || ||||| |||||| |||| ||||| ||| | Sbjct 34396 GATGCCCTCGACGGCGGCAAACGCGACCAGACGCTCGGCGAAAGTGGCACGCTTGTCGCT 34455 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| || || ||||| |||||||| | |||||| ||| || || |||| ||||| Sbjct 34456 GATCCATCGAAGAGCCCAGTCGGCCTTCTGCTTGACGACCGGGATGGTCTCGACGGCGT- 34514 Query 133134 CAACAAACGGAGTTT--CTCTTCCGAGG--AACGCACGTAGGTGTCGATGAGGGTCGAAT 133189 ||||| || || | || | ||| ||| | ||| ||||||||||| ||| | Sbjct 34515 ---CAAACAGATATTCACGCTGCTCAGGCTCACGGATGTAAGTGTCGATGAGCAGCGAGT 34571 Query 133190 ACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGA 133249 | | |||||||| | ||||||||| ||| || || ||||| ||||| || |||||| Sbjct 34572 AGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGAGCCTCGG 34631 Query 133250 CCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 | |||| ||||| | ||||||||| || || || ||||||||||| || || | Sbjct 34632 CGGCCTGAACTTCCGAACTGAAACGCTCAACGAGGTTCTCGTTGACGATACCATCCGACG 34691 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCT 133366 | ||||| || || ||||| ||| ||| || |||||||| |||||||||| | | Sbjct 34692 CAGCGAAGAACGCAAGCACATGCGAGATAAAGTGGCGCTCATTGTCGTTCAGCTTGTTGT 34751 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||||||| | ||||||||| ||||| | |||||| ||||||| || || ||||||| Sbjct 34752 CCCAGTCGTGGAGGTCCTTGGAAAGGTCGATCTCCTCTGCGGTCCAGAAGGAAGCCTCGG 34811 Query 133427 CTTTTTTGTACAT 133439 | || |||||||| Sbjct 34812 CCTTCTTGTACAT 34824 >seq1233 Length=330997 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||||||||| ||||| || |||| |||||| || | Sbjct 129130 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129071 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || || ||||| | || || Sbjct 129070 GACACCATCGACAACG-TCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 129012 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 129011 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAA 128952 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || || || ||||||| || | ||| |||| Sbjct 128951 CATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCG 128916 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| |||||||| |||| |||||| | | Sbjct 128902 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 128843 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 128842 GACACCATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCA 128784 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| || |||||||| Sbjct 128783 GCAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAA 128724 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || || || ||||| || ||| Sbjct 128723 CATTCAGAAGGAATCCACTCTTCACTTGGTCCTTCGT 128687 >seq1738 Length=83600 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || |||||||| || |||||||| |||| || ||| | Sbjct 80032 AAGATGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACTCTCGAGGTGGAGTCT 80091 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| ||||| ||||| ||||| Sbjct 80092 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAC 80151 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || || || |||||| Sbjct 80152 CAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAGGACGGACGTACGCTTTCGGACTAC 80211 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || ||||| |||||||| ||| || | || || Sbjct 80212 AACATCCAGAAGGAGTCTACCCTGCACTTGGTGCTTCGTCTGCGTGGTGG 80261 >seq335 Length=223780 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||| ||| | || || ||| || | |||| | | | | | || | Sbjct 31449 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTCAAGGCC 31508 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| |||||| ||||||| ||||| || || | ||| || || Sbjct 31509 AAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 31568 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | ||||||||| |||||||||||||| |||||| |||| || || Sbjct 31569 CAGCTCGAGGATGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAATCGACCCTCCAC 31628 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| ||| || | || || Sbjct 31629 CTTGTGCTCCGTCTGCGTGGTGG 31651 >seq909 Length=212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38250 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGC 38309 || || || || || || || ||||| || |||||| | || || ||| | |||||| Sbjct 212 ATCTTTGTCAAGACTCTGACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACA 153 Query 38310 GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGG 38369 | | | | || | || |||| ||||| ||||| || ||| | ||||| ||||| Sbjct 152 ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGT 93 Query 38370 CTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAA 38429 ||||| | || || || ||||| || |||| ||||| ||| |||||||||||||| Sbjct 92 CTCATCTTTGCTGGTAAGCAGCTTGAAGACGGCCGCACGCTCTCGGACTACAACATCCAG 33 Query 38430 AAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||| || || | ||| |||| Sbjct 32 AAGGAGTCGACACTTCACCTTGTGTTGCG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500160433227520