Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1233 96.9 1e-14 seq1175 86.0 2e-11 >seq1233 Length=330997 Score = 96.9 bits (106), Expect = 1e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||| || || || || || || |||||||| || || || || || Sbjct 129130 ATGCAGATTTTTGTTAAGACGCTCACGGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 129071 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | ||| || || ||||| |||||||| |||||||||||||| Sbjct 129070 GACACCATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 129011 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || ||||| || |||| | | || || || Sbjct 129010 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGAACGCTCTCCGACTACAAC 128951 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | || || | || |||||| | || || |||| Sbjct 128950 ATTCAGAAAGAGTCGACGCTTCACCTTGTGTTGCGACT 128913 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || ||||| || || || || || Sbjct 128902 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACCATCACTCTCGAAGTCGAGTCTTCG 128843 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || ||||| |||||||| |||||||||||||| Sbjct 128842 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCTGATCAG 128783 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || |||||||| | ||| || |||| || || Sbjct 128782 CAGCGTCTTATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACTCTGTCGGACTACAAC 128723 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || |||||||| || Sbjct 128722 ATTCAGAAGGAATCCACTCTTCACTTGGT 128694 >seq1175 Length=12806 Score = 86.0 bits (94), Expect = 2e-11 Identities = 270/417 (65%), Gaps = 11/417 (3%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | |||| | | || || ||||| | || ||||| |||| ||||| Sbjct 449 GGCAAGCCCCAGATTCGCATTGAATACAAGGGTGAGAAGAAGACTTTCACTCCCGAAGAG 508 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || ||||| |||||||| || ||| || || || || || | ||| | | Sbjct 509 ATCTCATCCATGGTTCTCCTCAAGATGCGCGAGACTGCCGAGGCTTACCTCGGTGGTACC 568 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | ||||| || | |||||||||||||| ||||| || | || || || || || Sbjct 569 GTCAAGGATGCTGTCGTCACTGTTCCCGCTTACTTCAACGACTCGCAGCGACAGGCCACC 628 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||| | || | || || | || || || || || || || || Sbjct 629 AAGGATGCTGGTATCATTTCGGGCCTTAACGTGATGCGTATCATCAACGAGCCCACTGCT 688 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaaaaaTATTTT 451488 || || | || || || || | | ||||| || || || || ||| || | Sbjct 689 GCCGCCATCGCTTACGGTCTCG-------ACAAGAAGACCGAGGGTGAGAAGAATGTTCT 741 Query 451489 AGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGT 451548 | || ||| | |||||||| || ||| || | ||| | ||||| || || | Sbjct 742 CATTTTCGATCTCGGTGGAGGTACCTTCGATGTATCGCTCCTTACCATTGAGGAGGGTAT 801 Query 451549 ATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || ||||| ||| |||||| || ||||| || ||||| || |||| || Sbjct 802 CTTCGAGGTCAAGGCCACCGCTGGTGACACCCATCTTGGTGGTGAGGACTTTGACAA 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975668329121624