Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1175 423 2e-113 seq1303 123 3e-23 seq1437 109 7e-19 seq247 91.5 2e-13 >seq1175 Length=12806 Score = 423 bits (468), Expect = 2e-113 Identities = 788/1150 (69%), Gaps = 8/1150 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||||| | |||||||| ||||| | || ||||| || || |||||||||||||| Sbjct 1302 TCACCCGAAAGAATGGCGGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTG 1243 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || || || |||||| || | || | | || | || | || ||| Sbjct 1242 ATCGACTTGTTAAGCTCACGACCGTTGAAGAAGTCGGTGAGCAGCTTCTGCACCTTGGGG 1183 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || |||||||| | ||||| || | || || || ||||| ||| Sbjct 1182 ATACGAGTAGAACCACCGACAAGGACGATCTCGTGAACAGAGCCCTTGTCAATCTTGGAG 1123 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTC 7248 || || || || |||||||| || || | | || ||| | ||| ||| || || Sbjct 1122 TCGCGGAGAACCTTCTCGACAGGCTCAATGG-TGTGCGAGAAGAGGTCACCACAGAGCTC 1064 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| ||||| |||||||| || || || ||||| || | || || | | ||| || || Sbjct 1063 CTCGAAACGGGCACGGGTGATCGAGGTGTAGAAGTCGATACCCTCAAAGAGCGAGTCGAT 1004 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || ||||| || || || | ||| || | || ||||| || |||||||| || || || Sbjct 1003 CTCGATGGTCGTCTGAGCAGCCGACGAGAGAGTACGCTTGGCACGCTCACAAGCAGTGCG 944 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | ||||||||||||||| | ||| || | || ||||| | || || || ||||| Sbjct 943 AAGACGACGAAGGGCACGAGCGTTGGTGGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTC 884 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | ||||| | ||| | || || || |||||||| | || || || || Sbjct 883 CTGGACAAAGTGGTTGACGAGACGGTTGTCAAAGTCCTCACCACCAAGATGGGTGTCACC 824 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||||| || ||||| || |||||||| | |||||| | | | ||| ||||| || || Sbjct 823 AGCGGTGGCCTTGACCTCGAAGATACCCTCCTCAATGGTAAGGAGCGATACATCGAAGGT 764 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 ||| ||||| || || |||||||| || ||| | || | || | ||||| |||||||| Sbjct 763 ACCTCCACCGAGATCGAAAATGAGAACATTCTTCTCACCCTCGGTCTTCTTGTCGAGACC 704 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAAT 7668 ||| ||||| || || || || || || || || ||||| | ||| ||||| | ||| Sbjct 703 GTAAGCGATGGCGGCAGCAGTGGGCTCGTTGATGATACGCATCACGTTAAGGCCCGAAAT 644 Query 7669 AGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTAC 7728 | | ||||| || || || ||||| ||||| ||||| ||||| || || || || || Sbjct 643 GATACCAGCATCCTTGGTGGCCTGTCGCTGCGAGTCGTTGAAGTAAGCGGGAACAGTGAC 584 Query 7729 GACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAG 7788 ||| || ||| |||| | |||||| || | || || | || ||| ||| || Sbjct 583 GACAGCATCCTTGACGGTACCACCGAGGTAAGCCTCGGCAGTCTCGCGCATCTTGAGGAG 524 Query 7789 AACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTC 7848 |||||| ||||| |||||||| | | || ||| | ||||| || | |||| Sbjct 523 AACCATGGATGAGATCTCTTCGGGAGTGAAAGTCTTCTTCTCACCCTTGTATTCAATGCG 464 Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908 |||| |||| | || | | |||| || |||||| | | ||| | ||||| || Sbjct 463 AATC-TGGGGCTTGCCACCG-ACCGAGG-TAACCTCGAAAGGCCAGTGCTTCATGTCAGA 407 Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968 ||||||| ||| ||||| | ||||| | |||||| || || || || ||||| Sbjct 406 CTGGACCTCAGCGTCGTCGAACTTGCGGCCGATCAAACGCTTGGCGTCGAAGACGGTGTT 347 Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTC 8028 | ||||||||||| |||||||| || || || || || ||||| || || Sbjct 346 GTGAGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCCAATGAGACGCTC---CGAGTC 290 Query 8029 CGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || || ||||| || || ||||| || || || || |||||||| ||||| | || || Sbjct 289 GGTGAAGGCGACATATGAGGGGGTAGTGCGGTTACCCTGGTCGTTGGCAATGACCTCGAC 230 Query 8089 GCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| |||||||||||| |||| || || || || || || | ||| |||||||| || Sbjct 229 ACGGTCATTTTGCCAGACGGCGACACAGGAGTAGGTAGTACCAAGATCGATACCGATGGC 170 Query 8149 TTGAGTCATT 8158 | |||||| Sbjct 169 CTTGGTCATT 160 >seq1303 Length=140700 Score = 123 bits (136), Expect = 3e-23 Identities = 272/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || |||||||| ||| | | ||| || || || | | | | ||| ||| Sbjct 134544 TCCTCGAATCGCGCACGGGTGATGTTGGCCTGGAAGTCGACACCCTGGAAGAGCGAGTCA 134485 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||| || || || ||||| || |||||||| || | Sbjct 134484 ACCTCGACGGTGGTCTGGGTGACCGACGACAAGGTGCGCTTAGCACGCTCACAGGCTGAA 134425 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | ||| |||| ||||| | || ||| || || || ||| | || || | ||| Sbjct 134424 CGGAGACGGCGAACAGCACGGGCGTCACCCGAGATGTCGAGCTTGTTCTTGCGCTCGAAC 134365 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| ||| || |||||| || |||||||| | ||| || || Sbjct 134364 TCCTTCTTGAAGTGGTCAAGAAGGGCGTTATCGAAGTCCTCACCACCAAGGTGGGTGTCA 134305 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| || ||||| | || | ||| || ||||| | | ||||||||| || Sbjct 134304 CCAGCGGTGGCCTTGACGGCGAAAACACCACCGGTGATGTTGAGGAGCGAAACATCGAAA 134245 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC-GTCGTCTTTGTTCTTATCGAG 7605 || || ||||| || || | ||||| |||||| | || |||| | || ||||| Sbjct 134244 GTTCCTCCACCGAGATCGTAGATGAGGACGTTCTTCTCAGTCGACGAC-TTGGAGTCGAG 134186 Query 7606 ACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG 7650 |||||| ||||| || || || || || || || || ||||| || Sbjct 134185 ACCGTAGGCGATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAG 134141 Score = 118 bits (130), Expect = 1e-21 Identities = 301/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || ||||| ||||| ||||| || ||||| || | ||| || Sbjct 133677 GCATCCTTGGTGGCGAGACGCTGCGAGTCGTTGAAGTAAGCGGGGACGGTGATGACGGCC 133618 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| || | | | || ||||| || ||||| ||||| || ||||| Sbjct 133617 TTCTTGACCTCCTTGCCAATCTTGGCCTCGGCGATCTCCTTCATCTTGGTGAGGACCATG 133558 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || |||||||| | | | ||||| || || || ||| | | || || || | | Sbjct 133557 GAGGAAATCTCCTGGGGGGAGAACTGCTTGGTCTCGCCGAGGTAGTTGACCTCGATGAAG 133498 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | || || | | | ||| | | ||| || | | ||| Sbjct 133497 GGGG-AGCCGT--CCTTGTCAATGACGGTGAAGGGCCAGTGCTGCATGTCCTTCTTGACG 133441 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | ||||| |||||||| || || || || || | |||||| Sbjct 133440 TCAGGGTCATCGTATCGGCGACCGATGAGACGCTTGGCGTCGAAGACGGTCTGCTTGGGG 133381 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 |||||||| | |||||||| || || || || || |||||||| | || || || Sbjct 133380 TTCATGGCAGCCTGGTTCTTGGCGGCATCACCAATGAGACGTTC---GCTCTCGGTGAAA 133324 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 ||||||||||| ||||| || || || || |||||||| ||||| ||||| || || || Sbjct 133323 GCGACGTACGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCAATGATTTCGACACGCTCA 133264 Query 8096 TTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || ||| ||||| || || || || || || Sbjct 133263 TTGACCCACCAACCGACACAAGAGTAGGTGGTACC 133229 >seq1437 Length=306877 Score = 109 bits (120), Expect = 7e-19 Identities = 444/694 (64%), Gaps = 22/694 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || || || || || || |||| || Sbjct 305019 TCAAAGTCCTCACCACCAAGGTGAGTGTCGCCGGCAGTGGCAAGAACCTCGAAGACGCCC 305078 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | ||| || || || |||||||| || || || ||| | | Sbjct 305079 GAGTCAATCGAGAGGAGCGACACGTCGAAAGTACCACCGCCAAGATCGTAAACAATGATC 305138 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || || |||| || ||| ||||||||||| ||||| || || || || || || Sbjct 305139 TGCGATTCACCGTCCTT---CTTGTCGAGACCGTAAGCGATGGCAGCAGCGGTAGGCTCG 305195 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | || || || ||| || ||||| || || | ||||| || || || ||||| Sbjct 305196 TTGACGATTCGCAGCACGTTAAGACCAGCGATGGTGCCAGCATCCTTAGTGGCCTGTCGC 305255 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| || ||||| || || || || || |||| ||||| || | ||||| Sbjct 305256 TGAGCGTCGTTGAAATAGGCGGGAACGGTGACAACGGCGTGGGTGACCTTGTGGCCGAGG 305315 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || | |||||||| || |||||||| | || | ||| || | | Sbjct 305316 TAAGCCTCAGCAGTCTCTTTCATCTTCTGGAGAACCATGGCCGAGACCTCCTCGGGAGTG 305375 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG--CAGCACCGG 7874 || ||| |||| ||||| | | || | || || || ||| | | | Sbjct 305376 AAGACCTTCTTTTCGCCGTTGACAGTGACCTGGATAGCAGGCTT-GCCGTTCTTCTC--- 305431 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA--CCTG-TTGGTCCGAAAACT 7931 || | ||| | | | || ||| | || || ||| || | || ||| Sbjct 305432 -GACGAGCTTGAAGGGGAGGTGCTTGGCATCCTTTTTGAGGTCTGATTCGCCC---CACT 305487 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGT 7991 | | ||||| || ||||| || ||||| | ||||||| ||||||| || | |||| Sbjct 305488 TGCGACCGATGAGGCGCTTGGCGTCAAAGATGGTGTTTTCGGGGTTCTGAGCGGCCTGGT 305547 Query 7992 TCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGG 8051 |||| || ||||| |||| ||||| ||| | || || ||||| ||||| || | Sbjct 305548 TCTTGGCAGCGTCTCCGACGAGACGCTCAGGA------GTGAAGGCGACATACGAAGGAG 305601 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | | || || || ||||| || | |||||||| || || |||| | | || | Sbjct 305602 TGATACGGTTACCCTGGTCATTGGTGATAATTTCGACACGACCGTTGACCTGTGCACCAA 305661 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||||| || || ||||| | ||| ||||| || Sbjct 305662 CACACGAGTAGGTAGTTCCAAGATCGATACCAAT 305695 >seq247 Length=52933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 206/306 (67%), Gaps = 14/306 (5%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC- 7515 || || || |||||||| | ||| || || || ||||| ||||| ||||||| || Sbjct 20478 TCAAAGTCCTCACCACCAAGGTGGGTGTCACCGTTGGTCGACTTGACCTCAAAGACGCCC 20537 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG---AG 7572 | || || | | | | ||| | ||| || ||||| || |||| ||| || | | | Sbjct 20538 TTCTGCA-TCTCGAGAATCGAGATATCGAAGGTACCTCCTCCCAAGTCGAAGACGGCAAT 20596 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||| | | |||||| || |||||||||| || | || || || || || Sbjct 20597 CACG---GAAGAGTCGTCACGGT------CGAGACCGTAGGCAAGGGCGGCGGCGGTGGG 20647 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || | ||| ||| || || |||||||| | | ||||| || || || || Sbjct 20648 CTCGTTGATGACACGGAGAACGTCAAGACCAGCAATGGCACCGGCATCCTTGGTAGCCTG 20707 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||||| ||||| |||||||| || || || | ||| |||| | |||| |||| || Sbjct 20708 GCGCTGCGAGTCGTTGAAGTAGGCAGGAACAGTGATGACGGCGTGCTTGACCGTCTTGCC 20767 Query 7753 GAGATA 7758 ||| || Sbjct 20768 GAGGTA 20773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635117096341520