Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1233 114 8e-21 seq1738 109 4e-19 >seq1233 Length=330997 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||| ||||||||||| |||||||| || | || |||| || Sbjct 128694 ACCAAGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGACAGAGTGCGACCATCTTCG 128753 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||| || | || | || |||||||| Sbjct 128754 AGCTGCTTGCCGGCAAAGATAAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGG 128813 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| | | ||||| | ||| | ||| || |||| || ||||| Sbjct 128814 ATCTTGGCCTTGAC----GTTGTCGATGGTGTCCGAAGACTCGACTTCGAGAGTGATGGT 128869 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| ||||| ||||||||||||||| Sbjct 128870 CTTGCCTGTGAGCGTCTTGACAAAGATCTGCATA 128903 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| || || |||| | || || ||||| || || || || Sbjct 128940 TCTTTCTGAATGTTGTAGTCGGAGAGCGTTCGGCCGTCTTCGAGCTGCTTACCAGCGAAG 128999 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || |||||||| ||||| ||||||| Sbjct 129000 ATGAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTG 129059 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| || ||||| || |||||||| ||||| ||| Sbjct 129060 TCGATGGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCCGTGAGCGTCTTAACA 129119 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 129120 AAAATCTGCAT 129130 >seq1738 Length=83600 Score = 109 bits (120), Expect = 4e-19 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||||||||| | ||| | || || Sbjct 80243 ACCAAGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTACGTCCGTCCTCG 80184 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| |||| | ||||||||||| Sbjct 80183 AGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGG 80124 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| | ||| | ||| || |||| || ||||| Sbjct 80123 ATCTTGGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCCACCTCGAGAGTGATGGT 80068 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| ||||| |||||||||||||| || Sbjct 80067 CTTACCCGTGAGGGTCTTGACAAAGATCTGCATCTT 80032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625774098384